The Doctor takes to the stars in this fourth installation of the Doctor Whooves Series.

When the TARDIS is unexpectedly pulled off course during her first foray into the wider universe, the Doctor, Rarity, Pinkie Pie, and a somewhat-reluctant Twilight find themselves brought to the doorstep of a utopian alien city. While Rarity and Pinkie immerse themselves in two opposite ends of the local culture, questions that have gone unasked for centuries draw Twilight into the shadowy labyrinth of intrigue and deception that sustains a delicate balance of power in this "perfect" society. A balance that some will go to any lengths to preserve.

And as the mystery surrounding the cryptic messages left in the Doctor’s path continues to unfold, will the growing schism of distrust between Time Lord and Friendship Scholar over unspoken secrets cost both ponies more than either of them are prepared to lose?

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"Only Skin Deep" is my fourth Doctor Whooves Episode and the sixth in the expanded "Number 12" continuity begun by the inspirational Squeak-Anon.

It is strongly recommended to read the following fics here on FIMFiction.net before proceeding with "Only Skin Deep."

1- Number 12by Squeak-Anon
2- Traveler by Squeak-Anon.
3- The Pinkie Conundrum
4- Game of Stones
5- Along Came a Spider

Comments and critiques are very much desired and let this crazed writer-pony know that the herd does indeed care.

Elements of Number 12 & Traveler (c) Squeak-Anon
Doctor Whooves Intro posted on Youtube by: Cshep99
Cover & Concept Art provided by FoxInShadow from Deviantart.com
Number One Assistant & Proof-Reader - 2dextreem
*Rated T for some Doctor Who level violence.*

Luna does her best to catch up on the events of the past thousand years and ends up reading even more than Twilight.

One day, an ancient tome slips into her pile of reading material and she reads it eagerly. What she finds there may very well be the discovery of the millennium: The location of the last refuge of the humans.

With the help of Twilight and her friends, the Lunar Princess sets out on an archaeological expedition to find the very last human on the planet of Equus.

And they found one, but why is he forged in a full body armor and claims to not being a human... Well he's not one anymore.

The Doctor has had a good, long run through time and space with Ditzy Doo. But it is that time again for him to regenerate bodies. But this time, it seems... different...
What would happen if The Doctor regenerated... as a mare?

There are many buttons in the TARDIS, most of them should only be pressed by professionals like the Doctor. Derpy, on the other hand, isn't a professional and she pressed a button. The TARDIS crashes into the universe of Minecraft leaving the duo of ponies stranded in the pixelated world with nothing but a broken TARDIS and each other.

Thanks to Lexicon and Minjask for editing!

It occurred one peaceful night. Half of Equestria awoke to the sound like a double-shot thunderclap. A percussion heard in the skies and rattling windows from Apploosa, to Canterlot, to Ponyville. Nopony knew what it was or what it heralded for the world as it drew a line across the nation.

For Twilight Sparkle, this isolated incident might have faded from memory after a time, if not for the strange rumors of a creature sitting on the hill on the outskirts of town.

These are her thoughts given written form. These are Sparkle's Notes.

Report EVERYTHING to the Princess.

A mysterious machine is discovered in the cellar of Canterlot Palace. Taking it back to Ponyville to study it, Twilight Sparkle learns that the machine is called a "supercomputer", and contains a mysterious virtual world--and a virtual mare who can't remember who she is. Even as Twilight and her friends learn they can enter the virtual world, something else that lives in that world awakens, and begins to attack the citizens of Ponyville...

("My Little Pony: Friendship is Magic" is the intellectual property of Hasbro. "Code Lyoko" is the intellectual property of MoonScoop.)

An unfortunate event gives Princess Celestia a fresh view on her life by forcing her to see the world from a very different viewpoint. With Equestria changing around her, she is faced with a personal crisis... if she can ignore how cute a certain lavender unicorn suddenly looks to her.

Featured on Equestria Daily!
And some site about horse porn!
Liked this story? Read the sequel.
And the story this was a sort-of prequel to.

Have you ever had a dream that just seemed so real, that it was impossible to say for certain that it was even a dream at all? A dream that, despite all of its impossibilities, seemed to re-write your entire perception of reality, re-writing your sense of what—and indeed, who—you are? Accepting change is hard enough as it is. But when you're a somebody who wakes up as a somepony, how do you cope with the impact such a drastic change has on your mind and body? With changes like these, it must surely just be a lucid dream—albeit a suspiciously accurate one—just brimming with potential and ripe for exploration. So you might as well suck it up and make the most of these distressingly…unusual circumstances, and seize this psychological adventure before you wake up and the dream ends.
After all, this couldn't possibly be real, so the dream must come to an end eventually…right?

This story is a sequel to Windfall

A brilliant mind discovers a problem in search of a solution, which leads to inspiration, which leads to invention, which leads to a technological/magical advance that will in time forever change Equestria.

Sequel to Windfall, set three years after the events in that story.

Cadence runs into Celestia while she is waiting for Shining Armor, and what starts out as an everyday conversation quickly becomes something else when Cadence reflects upon the heritage that both made her an alicorn and shaped the course of her life.