This story is a sequel to Doctor Whooves Episode 3: Aliens Among Us

After leaving Eugora, the TARDIS takes a giant leap through time and sends the Doctor and Twilight to Canterlot in the year 987. Here they come across an 8-year-old Shining Armor who is dreaming of becoming a royal knight. However, a devious villain has set her sights on the young unicorn and it's up to the Doctor and Twilight to save his magic, his life, and his future.

This story is a sequel to Doctor Whooves Episode 10: The Magician and the Angels

The Doctor heeds to Applejack's request and has the TARDIS take them to July 6, 996. It quickly becomes apparent that Applejack has a plan to change a certain event that occurred on this day. But her choice to attempt to change her future could very well lead to the destruction of the entire universe.

This story is a sequel to Doctor Whooves Episode 11: Parents' Day

The Doctor, Twilight, Derpy, and the others return to 1002 and arrive right in the middle of Canterlot a mere five minutes after their original departure. They arrive to find a troubled pair of alicorn sisters and an eccentric stallion who knows the Doctor well. However, they also come across a Dalek who has named Princess Luna as its next target.

This story is a sequel to Doctor Whooves Episode 1: The Doctor in the Box

Following an accident with the TARDIS, the Doctor and Twilight find themselves 1000 years in the future. Here they find a futuristic Equestria, a confused Queen Celestia, and a pony from the Doctor and Twilight's future who wants revenge.

This story is a sequel to Doctor Whooves Episode 19: The Rifts

The Doctor and his friends are busy celebrating Hearth's Warming Eve when an amnesiac, human Twilight Sparkle from another dimension appears with a cry for help. During the trip to this alternate world, the Doctor will have to save old friends, make new allies, face old enemies, and confront one of his greatest foes yet: himself.

This story is a sequel to Doctor Whooves Episode 15: The Christmas Ponies

The Doctor, Twilight, and Derpy decide to take Donna to Equestria. However, they accidentally end up in the year 56, where Equestria is currently caught in a bloody war with the newly-founded Changeling Empire. When Derpy and Donna are taken captive, the Doctor and Twilight must team up with a hardened Celestia and a simple farmmare in order to stop the merciless Queen Esmeralda.

This story is a sequel to Doctor Whooves Episode 14: Work of Fiction

The Doctor, Twilight, and Derpy finally arrive in the Doctor's universe, and just in time for Christmas. The Christmas cheer ends, however, when a group of odd enemies attacks a cozy country hotel. In order to defeat these strange foes, Derpy will have to face something from her past and Twilight will have to help the Doctor reunite with a lost friend.

This story is a sequel to Doctor Whooves Episode 16: A Country at War

The Equestrian and changeling armies have suffered greatly from the battle. Esmeralda is ready to end the war once and for all and sets her sights on the last safe haven in Equestria: Canterlot. As Donna ventures into the Changeling Castle to find Esmeralda's greatest weakness; the Doctor, Twilight, and Angie take charge and Angie goes beyond what she ever expected of herself.

This story is a sequel to Doctor Whooves Episode 17: Angie the Great

Upon returning to Ponyville, the Doctor learns that there's a new mare in town by the name of Colgate and that she desperately needs his help. When a chance encounter leads to Twilight and Pinkie Pie getting trapped in the past, the Doctor will have to solve the mystery behind Colgate's curse as well as learn her connection to an ancient and lonely creature.

This story is a sequel to Doctor Whooves Episode 13: Clockwork and the Doctor

The Doctor, Twilight, and Derpy head off to the Doctor's home dimension, but something goes wrong and they instead end up in a dimension where they were merely fictional characters in television shows. Things get even more complicated when they end up separated at a certain My Little Pony convention alongside two fans and a mysterious figure with an odd arsenal of powers appears.