This story is a sequel to Equestria Ninjas: The Movie

After the Mutagen Bomb, the world was wiped out, leaving the turtles and the Rainbooms separated from each other. Now they must fight to survive in the apocalyptic wasteland from the threat of warring mutant gangs all while trying to find the only place left in the world that has any life to it.

This story is a sequel to Equestria Ninja Girls: Wanted Bebop and Rocksteady

When Sunset Shimmer discovers the Rainbooms and the students have lost their good memories of her, she and Fugitoid must enlist the help of some unexpected allies to recover those lost memories before they're gone forever, and Sunset will forever be remembered as a bad girl.

***Now with Beach Shorts

This story is a sequel to Equestria Ninja Girls: Forgotten Friendship

The Festival of Friendship is interrupted when the Storm King Invades Equestria. Now Princess Twilight and her friends and ninja friends must ban together and voyage to lands unknown to look for help to stop the evil King and save Equestria.

This story is a sequel to A Rainboom Turtle Christmas

Hoping to find some excitement, the Rainbooms visit the Turtles only to find out Bebop and Rocksteady have allied themselves with Krang and an alternate Shredder who hope to conquer their dimension.

This story is a sequel to Equestria Ninja Girls Rainboom and Crystal Ninjas

The Rainbooms and their Ninja friends from New York are back again for another adventure. After a mishap when battling Subprime and the Kraang the heroes and enemies are flung into another dimension landing in the dark city of Gotham. Cut off from their normal allies, the ninjas seek out the help of the Batman and his friends to find a way to get home. If they can all learn to work together that is.

Unfortunately for them, the Kraang have made allies of their own in the form of Gotham's baddest and insane Villains and Psychopaths, with Joker and Subprime leading the operation.

A little story done by my artist friend jebens1 who requested I put it here with the rest of the stories. This takes place following the events of Rainboom Crystal Ninjas, but before the events of Wanted Bebop and Rocksteady.

This story is a sequel to Equestria Ninja Girls Rainboom and Crystal Ninjas

The turtles and their human friends return to Equestria to uncover the truth behind the disappearance of Star Swirl the Bearded and the Pillars of Equestria. But will discovering the truth lead them to an even bigger problem?

This fic contains no spoilers from Equestria Ninja Girls Rainboom and Crystal Ninjas

This story is a sequel to Turtles of Equestria

The Rainbooms and Turtles are back together again taking on old foes and new foes with the help of the girls of Crystal Prep and an old robot friend. But with a vengeful ex-principal out to prove the existence of their magic, they may be in for a load of trouble.

This story is a sequel to Turtles of Everfree

After saving Camp Everfree from being taken by Filthy Rich, the Rainbooms, the Turtles, and the Dazzlings tell the campers a story of when they time traveled back to the Dinosaurs time where they had to tame Dinosaurs, fight Triceratons, and rescue Bebop and Rocksteady.

This story was written in a collaboration by my artist friends from deviantart jebens1 and TMNTony

And was published here by me to take its place among the rest of the Equestria Ninja Girls series here.

This story is a sequel to Turtles of Everfree

After the death of Master Splinter, the Rainbooms and Turtles team up to take the fight to the Super Shredder with the aim of ending him once again for all to avenge their sensei. Will their combined strength and friendship be enough to overcome the rage and evil of the most powerful mutant they've ever tussled with?

This story is a sequel to Equestria Ninja Girls in Space

After a mishap with a portal, the Turtles and their human allies find themselves joining the Rainbooms at Camp Everfree where there's mystery and magic in the air. With the Rainbooms gaining new magical abilities, they take their next step in their ninja training to learn to control their new powers and defend their friends from a danger lurking within the camp itself.

Sequel following the events of Equestria Ninja Girls in Space. Recommended to read before this.