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Mystery

Put your mystery themed fan fictions here.

Order: Date Added

TA Letter Through Time
MLP: FiM
EaW
Mystery
Sci-Fi
Thriller
Twilight and Spike discover a letter that was written 20 years into the future. A price will be paid if they seek down the answers; one that they would not be ready to face.
Violence
Alt. Universe
Twilight
Spike
Other
Catpaw616 · 1.2k words · 10 0 · 249 views
TThe Rainbooms Meet Lamia
Equestria Girls
Romance
Adventure
Mystery
The Rainbooms are on a field trip cruise to Greece. They offer to join Professor Fossil as she digs up some ruins, but find a creature that was supposed to be nothing but myth.
Sex
Violence
Death
Profanity
Crossover
Alt. Universe
OC
Other
Dazzlings
Main 7 (EqG)
Lord Shadow Eclipse · 7.9k words · 11 0 · 491 views
TEquestria's Dinosaurs: The Utahraptor Pack
MLP: FiM
Adventure
Mystery
Slice of Life
A pack of Utahraptors is transported to Equestria by unknown means. How will they survive in this strange world?
Violence
Alt. Universe
Spike
Trixie
OC
Main 6
Starlight Glimmer
Lord Shadow Eclipse · 10k words · 13 0 · 455 views
TSpringtrapped: An MLP/FNAF Crossover
MLP: FiM
FNAF
Dark
Sad
Thriller
An innocent person went to a convention dressed as Springtrap from FNAF, only to become the actual killer when transported to Equestria.
Gore
Violence
Death
Profanity
Crossover
Spike
Celestia
Luna
Other
Main 6
Lord Shadow Eclipse · 25k words · 37 6 · 718 views
TRedeemed
MLP: FiM
MLP: Movie
MLP Gen 5
Dark
Adventure
Slice of Life
The long-anticipated clash has finally arrived. The world’s magic has been destroyed and all hope is gone. With the fate of Equestria hanging in delicate balance, Misty must lead her friends in their final confrontation against Opaline….
Gore
Violence
Suicide / Self Harm
Death
Profanity
Alt. Universe
Izzy Moonbow
Sunny Starscout
Mane 5
Opaline
Misty
Admiral Producer · 84k words · 26 5 · 1.6k views
TSHMM: The Phantom Blue Flame
MLP: FiM
Comedy
Mystery
A monster mare mystery story. Featuring ponies that're a mushroom and a fairy, both tasked to catch a thieving Teumessian, a species that's predestined to never be caught. Can a set of detective skills change this fate?
Alt. Universe
OC
Amereep · 14k words · 187 views
TWhere Only Silver Shines
MLP: FiM
Romance
Drama
Mystery
Two young ponies attempt to unveil the mysteries of The Tower, a strange and cruel place that seems to defy many laws of nature.
Gore
Violence
Death
Alt. Universe
Luna
OC
Bat Pony
Etyco Filly · 105k words · 25 3 · 410 views
TBad Dragon's Short Stories
MLP: FiM
Anthology
Got a minute? It will take you even less to read one of these unrelated short stories designed for instant reader’s gratification.
Spike
Bad Dragon · 10k words · 34 39 · 1k views
TAvenge me!
MLP: FiM
Drama
Random
Tragedy
After the death of Pinkie Pie, Rainbow Dash swore to get revenge on the pony responsible for the crime
Violence
Death
Second Person
Rainbow Dash
Pinkie
Starlight Glimmer
Anonymous15 · 9.6k words · 8 11 · 273 views
TBizarre and sick
MLP: FiM
Dark
Tragedy
Anthology
There will come a day when these "Friendship" ideals will collapse under their own weight so listen up, you bunch of bastards. With me you cannot. I challenge the filthy, the sows, the dogs, the scoundrels. I'm a rebel.
Violence
Gore
Suicide / Self Harm
Death
Second Person
Anthro
Crossover
Human
Alt. Universe
Twilight
Applejack
Main 6
Starlight Glimmer
Autumn Blaze
Birdring · 4.3k words · 24 6 · 1k views
TThere's a Monster Pony Outside My Window
MLP: FiM
Dark
Adventure
The Portsmith family is a regular American family living in Denver in 1986. Life is hard, but it is about to get harder when they find themselves hunted by something that is not of this Earth.
Narcotics
Violence
Profanity
Human
Alt. Universe
OC
Halira · 105k words · 55 6 · 827 views
TThe maned ape
MLP: FiM
Adventure
Mystery
A strange ape-like creature is found in a lab in Manehattan. Its injuries are clear that it was hunted for sport by poachers before being captured.
Violence
Gore
Profanity
Human
Alt. Universe
Fluttershy
Twilight
Rainbow Dash
Applejack
Main 6
sykko · 44k words · 374 26 · 5.8k views
E40 Years
MLP: FiM
MLP Gen 5
Adventure
Mystery
A community collaboration of a tale that spawns across all generations of My Little Pony.
Alt. Universe
Crossover
Main 6
Grogar
Mane 5
bookhorse125 · 41k words · 72 3 · 1.4k views
EReviving the Past
MLP Gen 5
Adventure
Mystery
Random
Megan meets the Mane 5
Crossover
Human
Other
Mane 5
Opaline
Misty
TalB · 4.3k words · 21 2 · 1k views
EDestiny or Coincidence?
MLP: FiM
Dark
Mystery
Sad
Bringing back a living legend
Crossover
Human
Celestia
Luna
Other
Main 6
TalB · 9.9k words · 29 8 · 1.8k views
TThe Murder at Mane Melody
MLP Gen 5
Mystery
Sad
Tragedy
A body was found in Pipp’s salon, Mane Melody. It’s time for Zipp to get on the case
Death
Violence
Other
Pipp
Zipp
Lulamoon-Crystal · 15k words · 37 2 · 1.2k views
TSamneo: The Earth Pony DX
MLP: FiM
Romance
Mystery
Slice of Life
Starlight went to get some fresh air, when a comet suddenly crashes in the yard, leaving a mystery stallion in the impact. He's taken into the care of everypony, where he reveals a secret power.
Profanity
Human
Rainbow Dash
OC
Samuel-Neocros · 18k words · 221 views
TThe Dragon Sisters
Equestria Girls
Adventure
Drama
Thriller
A group of dragons have suddenly appeared in Canterlot City and they seem to be looking for something... or someone.
Violence
Human
Alt. Universe
Spike
OC
Other
Main 7 (EqG)
Mechazilla88 · 12k words · 76 4 · 2.8k views
TYou Will Never Escape
Equestria Girls
Horror
Mystery
Sad
Shimmering Diamond Detective Agency receives another missing persons case. These rarely involves more than a few phone calls to find out the person just went no contact with the client, but this one's a bit different.
Profanity
Death
Sunset Shimmer
Autistic Witch · 49k words · 10 1 · 240 views
TRevival of Tambelon
MLP: FiM
Adventure
Drama
Tambelon Ancient Dark City Grogar's Stronghold formerly the Capital of Equestria Now Locked in the Dark Dimension but its inhabitants are waiting for the day when they can return to Equestria!.
Violence
Alt. Universe
Main 6
Cozy Glow
Grogar
Kaliber · 5.7k words · 39 8 · 933 views
TCMC Watch Bedtime Stories
MLP: FiM
Dark
Mystery
Slice of Life
The Cutie Mark Crusaders react to the Bedtime Stories YouTube channel.
Sex
Gore
Violence
Suicide / Self Harm
Death
Profanity
Crossover
Human
Rarity
Other
CMCs
Lord Blundergosh · 150k words · 126 9 · 3.8k views
TForgotten Bygones
MLP: FiM
Adventure
Mystery
Thriller
Starlight, Trixie, and Discord are treated like enemies again, but how? And why?
Violence
Gore
Death
Alt. Universe
Twilight
Trixie
Discord
Starlight Glimmer
Catpaw616 · 57k words · 125 9 · 2.2k views
TBefore Time Began to Flow
MLP: FiM
Dark
Mystery
Out of sight and out of mind, a dark figure contemplates a lost art and his past reign.
Gore
Sex
Violence
Death
Celestia
Luna
Discord
Other
Chrysalis
Humanity · 12k words · 240 30 · 7.7k views
TRecollections: A Sunflower Story
Equestria Girls
Romance
Mystery
Thriller
I didn't know what I was expecting when I rushed to help an unconscious girl I found laying on the school grounds, alone with no memories. I didn't expect a mystery. I didn't expect to dig so deep into a rabbit hole. I didn't expect to find love.
Sex
Violence
Suicide / Self Harm
Alt. Universe
Twilight
Sunset Shimmer
Main 7 (EqG)
Wallflower Blush
The Lone Doctor · 23k words · 33 5 · 866 views

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