After her sister's banishment, Celestia realized it was her failure that led to her sister's fall, and she vowed to build a better nation that her sister would have wanted. Here, Nightmare Moon is neither myth nor legend; everyone is taught about what truly happened to Princess Luna, and that the two are one and the same. Through her millennia of atonement, Celestia upholds her sister's visions for a better Equestria, reviving her lost legacy.

Now, at the 1000th summer sun celebration, the town of Ponyville is ready. Eager to witness the historic event, everyone's there to show their love and appreciation as they welcome the Princess of the Night's return. Would Nightmare Moon still seek retribution and bring nighttime eternal? Or would she reunite with her long-lost sister, graciously returning to her throne? It doesn't matter to Celestia. She just wants to see her sister once again.

King Sombra survived the power of the Crystal Heart, and for a moment, it seemed as if his victory was assured.

But then the undead warlock Richard shows up. Turns out, he's been talking to the Crystal Ponies, hearing tales of what they've suffered at Sombra's hands. And surprisingly enough, he is not a fan of what Sombra has been up to.

Needless to say, Sombra's day has just taken a turn for the worse to end all turns for the worse.

A short, silly crossover between My Little Pony: Friendship is Magic and Looking For Group. Dark tag is for Black Comedy and Richard being... well, actually, he's really being a lot more morally upright than he usually is in the original webcomic. Probably has something to do with the fact that his preferred battlecry is "for pony". Anyway, even though the target of Richard's depredations may be fully deserving of it (this time, at least), there are still implications of an I Have No Mouth Yet I Must Scream-esque fate, so the dark tag stays in place.

Jason Wright is dead. The Elements and all of Ponyville are to blame for his abuse for three long horrendous years. Princess Celestia, upon hearing about this, lays down righteous judgement on each of them. This breaks their friendship and causes them to scatter to the winds while also destroying the reputation of Ponyville itself.

Two years later, a second human enters Equestria for a job. He and his new companions are a part of a mercenary team, not well known, but unique in their own way. Little does this human know that a simple job his team accepted in Equestria will lead him to becoming involved in something bigger.

EDIT: Changed setting to Teen, but may change it back if things get a bit too dark.

Opaline Arcana has sowed dissent and anger across Equestria. With the nation divided, Princess Twilight Sparkle and her friends are struggling to contain the ambitious alicorn. If something isn't done soon, Twilight will have no choice but to store Equestria's magic into the Unity Crystals, putting all of ponykind at risk.

Before that, though, Twilight has an idea. There's a prisoner locked away in Tartarus that was forgotten by history. He might be just what they need to stop Opaline. However, letting him loose could spell disaster for Equestria.

It's a risk she has to take.

Jason Wright fled Ponyville after his failed attempt on his life. Lost and in a haze, he didn't realize how far north he had gone until he awakened the slumbering entities of frost. Now, bound to them and gifted with a forgotten gift of the Goddess, both sustain each other as they go to Equestria with one goal in mind:

Finish what was started long ago.

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This story is a sequel to Rider on the Storm

For the briefest of moments, Anonymous wielded absolute power. He single-handedly destroyed the city of Canterlot, laid waste to Ponyville, decimated the Everfree Forest, and came dangerously close to annihilating the very Tree of Harmony itself. And he had an absolutely fantastic time doing it.
Right up until he lost.
Now he's stuck as a statue under the watch of the princesses he tried to subjugate, awaiting the time he'll be locked away forever, with the key no doubt thrown into a volcano. But from the very beginning, Anonymous suspected that the shenanigans of the good guys would cost him his victory at the last moment, and so he laid plans with his most loyal of subjects—all former soldiers of the Storm King he betrayed to obtain his power—to arrange for his release should the opportunity arise.
Unfortunately, he wasn't counting on the ponies calling in help from a faraway land. Enter the Four Princes of Zebrica, all wielding the same exact power that Anonymous did, and knowing a thing or two about how to put bad apples like him away for good. This is made even worse by the sorry state of Anonymous's storm beast forces, having hit hard times in the months since his defeat.
But not all is lost for the petrified supervillain. Because in a rare twist of luck, the Princes just so happen to unknowingly bring with them a zebra criminal with his own dirty little secret. A secret that not only secures Anonymous's release from captivity, but just might be the start of a horrifying new partnership, and with it, the birth of a new force of evil.
And of course, with all that going on, there's always the matter of the nascent Legion of Doom, plotting to bring their own age of darkness to Equestria as well...

Takes place during the final two seasons of Friendship Is Magic. With a few alterations here and there, because I HATE THE ANTI-FIM I HATE THE ANTI-FIM :bread:
Reading Rider on the Storm is strongly advised if you want any idea of what the hell is happening in this story.

If you ever met Sunstone when he was but a young colt, you would’ve seen a large grin, two purple eyes full of determination, and an earth pony who could take on the world.

But something happened over the years. As Sunstone grew older, more and more did his cheerful smile morph into an ugly scowl. His enthusiastic attitude gradually capsized, leaving in its stead a disgruntled husk of his former self.

Shining Armor and Twilight Sparkle: Two gifted unicorns that would quickly undermine everything Sunstone has been hoping to achieve, unintentionally turning him into the underdog he never wished to be. Resentment overtaking his better judgement, feeling doomed to be living forever in the shadow of his immensely successful brother and sister, Sunstone has had a lifetime of feeling thoroughly unremarkable.

Unable to bear his inability to stand out amongst his younger siblings, Sunstone vowed to never see his family again. It’s been five years since he departed on a journey to finally understand his true place in Equestria.

Not once has he looked back at the life he left behind.

The earth farmer that previously lived in a corner of Equestria, mysteriously finds himself waking up inside a forest he didn't recognize.

So, he does what he has done his entire life.

Keep living in the present.

It's worked for long enough, why wouldn't it work now?

Also why are so many ponies with life problems coming to him?

And why is the number just constantly increasing?

This story is a sequel to Cold

Time flows differently, in the multitude of plains that make up the universe. Seconds here can be hours there... and hours here can be decades over there. There is, however, one universal constant among all time and space: Time never stops. Perhaps I counted on time as my ally when I cast that spell and dove into the past... if only I'd know just how cruel and unwavering it can really be.

Thirty years, I've tried... in most other worlds, it's probably been hundreds, but I've managed to keep track. Thirty years of searching, trying and trying again, desperately doing everything in my power to bring you back... and all that I've learned is that unless I make this choice, it's simply not possible... I hope you'll forgive me. I know that'll be hard... but maybe given enough time, you'll understand... -Twilight Sparkle

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Tirek has won. As he escapes from his cell in Tartarus and wreaks havoc across Equestria, he has taken down the Princesses and has stolen all their magic from Twilight.
But during Tirek's victory... someone new shows up.