"Like two peas in a pod we did everything together!" sang Twilight in the season finale. But what if she was letting on more than everyone else knew? What if Twilight really was a pea?

This story is a sequel to My Little Alicorn

After the events of "My Little Alicorn," everything seemed to be back to normal...except for one pony. Prince Blueblood is now trapped as a colt, his title, possessions and birthright stripped for his crimes. Before Princess Celestia will return him to normal, however, he must prove himself by attending Magic Kindergarten. Even worse, his current situation has attracted the vengeful gaze of two ponies he has offended in the past: the Captain of the Royal Guard and the Moon Princess.

Will Blueblood rise above his past self and emerge a better pony? Or will he sink back into his old depravity, and be stuck a colt for the long term?

Note: This is a sequel to "My Little Alicorn," so you might want to check that out first.

Luna has had enough of Celestia's games, and has found the perfect means of revenge. Using a long-forbidden spell, she transforms her sister into little more than a small filly, all so she could pull the greatest prank ever. Unfortunately, she soon learns that before you fool around with dangerous magic, you really need to read the fine print...

A sequel can be found here.

Twilight Sparkle and her fellow Elements of Harmony have faced down supernatural foes of the highest order, but sometimes the deadliest danger can come from places one would least expect. As Twilight is forced to bear a devastating secret, her efforts to keep the Elements together may well tear them all apart.
The plotline of the thrilling Pony Psychology Series continues with an exploration of deception, despair and Discord.
This series takes place between Season Two and Season Three.
Secrets and Lies shares the Pony Psychology Series TVTropes page.

For almost a thousand years, the immortal Nightmare Moon has reigned over Equestria as Empress. To the average pony, Nightmare Moon is an overarching enigma whose rule is absolute and whose wrath is terrible. But to Twilight Sparkle, who as an orphan has never known her parents, the Empress is something else entirely. When the young unicorn is brought under the royal wing as an apprentice, she learns a great deal more about the supposed tyrant than she ever knew. But as Twilight is introduced to life with her new mentor, she is thrust into a world of political intrigue, conspiracies and secrets. Secrets that were never meant to be revealed. As allies and enemies plot against the very peace of the nation, will Twilight fall prey to the perils of her new position? Or will she prosper and find in Nightmare Moon the mother she never had?

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My eternal gratitude to my editor, LordOfTheWrongs, without whom Night's Favoured Child would not be the story it is today.

Now with added TVtropes!

Nightmare Moon has won, and the world has been shrouded in eternal night. But hope still lives. The land of Equestria is currently divided between the armies of the usurper and those of the Dawn Militia. However, the greatest danger to the rebellion may not be the dreaded Mare of the Moon, but her lieutenant, Eclipse–formerly known as Twilight Sparkle.

Sometimes, bad things happen to good ponies. A year following a tragic incident, Twilight Sparkle returns to Ponyville to visit what she has been missing - her town, her memories, and most importantly, her friends. But will everything be as she remembers it?

This story has a sequel titled "In History, Maybe".

After the disastrous invasion of Canterlot, an injured changeling wakes up near a small cottage and is quickly discovered by two of the last ponies she ever wanted to see. Now, with the help of her new "friends," she has to remain undetected in a town high on changeling hysteria that would not hesitate to throw her in the Canterlot dungeons should her true nature be revealed.

Simple, right?

Too bad she couldn't have picked a worse form to stay inconspicuous...

Many thanks to ZuTheSkunk for the cover image!

When Rarity is given an order for a dress, a series of unfortunate circumstances lead her to request the aid of Twilight Sparkle. When she discovers that Twilight has been studying time spells, she asks if she can help her recover some of her time. Reluctantly, Twilight agrees, but when she is performing her spell, something breaks her concentration causing the spell to become unstable, sending them 15 years into the future. What awaits them in a world where they have been missing for so long? Will they ever get back to their own time? Only time will tell.

*WARNING*
COMMENTS CONTAIN SPOILERS
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Art by Dreatos
- http://dreatos.deviantart.com/gallery/?offset=24#/d47n304
Seriously, check out his work. He is one of my favorite pony artists.

Humans.

Truth or myth? Ancient lost civilization or just an old pony's tale?

No pony has ever seen one, and most haven't even heard of them. But Lyra knows that these wonderful creatures are more than just old legends, and she's going to find out... and possibly drive her roommate insane in the process.