The Legendary

Background Pony "My name's Lyra Heartstrings, but you won't remember anything. Listen to my symphony, for it by shortskirtsandexplosions 432,377 words · 6,906 · 249
Silent Ponyville Pinkie Pie goes to Twilight to end her horrible nightmares. by SamRose 30,459 words · 1,844 · 38
CRISIS: Equestria The Elements of Harmony find themselves transported to a world full of evil and darkness. On the journey home they make new friends, as well as new enemies in the form of evil counterparts to themselves. by GanonFLCL 711,406 words · 167 · 5
Hard Reset Twilight gives her life to stop a changeling invasion. Repeatedly. by Eakin 36,358 words · 8,342 · 136

The Popular

Lines and Webs In a world of peace, there must be Order. No matter what the cost. by Airstream 161,563 words · 1,407 · 55
The Sweetie Chronicles: Fragments Sweetie Belle must find Twilight by travelling through different Fanfic worlds... by Wanderer D 577,453 words · 3,365 · 69
Sunset of Time Sunset Shimmer: Princess Twilight Sparkle's most faithful student. After bearing witness to the End of the World, she travels back in time to destroy the Dark Regalia and save her future. But a ghost from the past has other plans... by Albi 232,768 words · 1,374 · 36
Letters From a Friend at the End of the World Twilight receives a letter from Trixie one day, but it raises more questions than it answers. by alexmagnet 132,107 words · 1,914 · 57
Triptych When a new mission for the Element-Bearers (from an unexpected source) arrives three weeks after Twilight's ascension, she finds herself forced to confront a pair of questions: what truly makes an alicorn? And what happens if it goes wrong? by Estee 498,858 words · 1,186 · 64

Popular stuff is popular

Shadow of the Sun The sun has stopped moving! Twilight and friends must set out on a dangerous adventure to discover why. by Starwin 118,134 words · 365 · 9
Inner Glory A utopian society cannot exist without the corpses of the revolutionaries. by Erindor 226,182 words · 906 · 57
The Powers of Harmony The Mane Six develop the powers of the Elements of Harmony and must use them to stop a new villain. by CyborgSamurai 326,055 words · 1,859 · 46
Into The Depths Celestia must brave the depths of her old castle to save Twilight and Luna by Pen Stroke 44,087 words · 1,807 · 26
The Clockwork Consequence Social reject, blank flank, and failed candidate for Celestia's School for Gifted Unicorns. Twilight Sparkle holds little confidence for her future. But when even her own recluse world comes crashing down, will she choose to act? by Michy 221,501 words · 1,373 · 68