Twilight Sparkle is having reoccurring nightmares. Then after some strange things happen one night, Twilight is called up to Canterlot by the Princess for a special assignment.

Ponyville has been devastated by a supernatural plague, possessing everypony in the village, turning them into blood-thirsty totally-not-zombies. It has degenerated into a desolate ghost town, devoid of almost all life that has not become a sunken-eyed shell of what it used to be.

All because Twilight Sparkle didn't listen.

But there is still hope. There just has to be.

[Pre-read by EvenMotion and Topsy Kretts. Cover image by AlGreat. (C) nobody 2012.]

Daily work for this astronaut, until everything goes wrong. How would a scientist react when facing things science can't explain, when dropped in a world technologically behind of a few centuries. Or is he simply going insane?

After failing to stop Nightmare Moon in the ancient castle of the pony sisters, Twilight Sparkle is left with a scar that will permanently change the rest of her natural born life. As Twilight recovers from her ordeal, she finds that she is left with a difficult choice. Either live her life as a lie or sacrifice her innocence to protect the ones she loves. The path before her is set and she must now walk it alone. The sands of time continues ever onward, with everyone already trapped in its muddy depths. The sun will rise and the sun will fall. Waiting for its call, Death awaits for all.

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I just put the two together

One day, Fluttershy wakes up only to find herself in a changed world. Ponyville and Equestria are not how she remembers them: airships cross the sky, steam-powered machinery drives the economy and the rule of Celestia is no more. In this strange alternate world, Fluttershy reunites with her dear friends and learns of the event that changed history itself. Worse, the timid pegasus seems to have arrived just in time to witness the rapidly approaching climax of a civil war that has been raging for three hundred years...

The Sequel to Number 12.
The Doctor and Twilight leap into the future, though it may be a far darker place than they envision. In the mean time somehow the Doctor keeps crashing around Ponyville, something to do with Fluttershy, but what?

Rainbow Dash usually had her head in the clouds, but she always thought she knew up from down. When an incredible revelation sends her life into a tailspin, she finds herself at the mercy of emotions she never thought she had, faced with hard questions and impossible choices.

Life is full of changes, but none of them are quite as disturbing as having a horn pop out of your skull…

Original Lauren Faust canon; non-alicorn Twilight, non-alicorn Cadance, no ascension. Diverges from the cartoon after season 3, with nods to later continuity wherever possible. Contains mature themes.

Twilight Sparkle: magician, scholar, bearer of the element Magic, and most of all, friend.
A bat, a book, and a bite can change so much of that, and bring darkness to her heart.
Can you keep your friendships when you might hurt those around you?
If you want to hurt them?
Bloodlust can bring an end.