This story is a sequel to A Stitch in Time

Having discovered the message left for her by Star Swirl the Bearded in the distant past, Twilight once again finds herself caught up in the middle of a struggle against forces far greater than herself. In order to even stand a chance she'll need to travel further and wider than she ever has, and forge some unlikely alliances with old enemies. All to bring down the powers that have manipulated and shaped her entire life, and retake control of her own future.

The conclusion of the Time Loop Trilogy, which began with Hard Reset
Available in Spanish thanks to dgs1993
Series TV Tropes page

This story is a sequel to Hard Reset

After the events of Hard Reset Twilight's life and mental well being are slowly returning to normal. Her recovery is cut short, though, when a letter arrives informing her that the time loop spell she cast is causing severe damage to space and time itself. In over her head, Twilight tries to summon anypony who will know how to fix it. The pony she gets is the last one she ever thought she would meet... and nothing like she expected him to be.

Available in Spanish thanks to dgs1993
Series TV Tropes page

This story is a sequel to Too Shy for a Rainbow

If you liked this fic, check out the awesome Audio Dub version of it by The Lost Narrator!:
https://www.youtube.com/playlist?list=PLnqCBZacYIwK0xcHv85Lke-xFf5V9p7R4

It's been a month since Fluttershy and Rainbow Dash started dating. Everything was going fine until Fluttershy started experiencing horrific nightmares that started keeping her up at night. Looking for answers, Rainbow Dash, Fluttershy and Pinkie Pie seek out Twilight. But when the three mares find themselves within the world of Silent Ponyville, will things turn out for the better? Or will things end in tragedy?

Sequel: http://www.fimfiction.net/story/14866/Silent-Ponyville%3A-Reunion

This story is a sequel to Stardust

Twilight has finally returned home from the harrowing challenge that Discord set upon her, and the residents of Ponyville and the Elements especially look forward to having their dear friend returned to them.

Twilight, however, has changed. Still suffering from her injuries, almost incapable of using magic and haunted by the memories of her time on Earth, she becomes increasingly withdrawn from those who were closest to her. Will her frustration at her current state and her friends inability to understand her experiences cost her what she valued most before Discord's bet?

(Sequel to Stardust, familiarity with this is recommended!)
(Proofread by Arzoo!)
(Coverart commission drawn by the amazing KairaAnix!)
(Crossover with XCOM: Enemy Within, though the crossover and human elements are minimal)
(Featured 4/28/2014, thanks folks!)

Pinkie Pie is being tormented by horrific nightmares. Unable to deal with it by herself anymore she seeks out Twilight's help, but will it have been the best decision when she finds herself alone in an abandoned, fog filled Ponyville?

Sequel: http://www.fimfiction.net/story/4676/Too-Shy-for-a-Rainbow

There have been a LOT of high-quality readings of Silent Ponyville, but this one is my personal favorite:
https://www.youtube.com/playlist?list=PLGh01rbB4o3xoSV7a6Omc-UJROXHRZ1Hv

What Spike saw in the doorway of King Sombra's crystal palace hasn't left his mind. The fear of Twilight abandoning him haunts him through recurrent nightmares. Anxiety taunts him when he's at his most vulnerable, reminding him of all his failures, all his inadequacies, all his wounds.

One night, this fear and anxiety manifests itself in a full-blown nightmare, dragging Spike face-to-face with his greatest fear. What if Twilight never needed Spike in the first place?

Takes place right after the Season Three opener (before Episode Three).

Thanks to RGLloyd for editing.

Now Featured on Equestria Daily!

Now Featured by The Royal Canterlot Library!

Check out the YouTube reading by the awesome Chinchillax!

Check out another YouTube reading by DJ Tazzlez from Hive Radio!

Rated Teen for some dark elements.

Isolated from her friends and taken prisoner in the middle of a war, Twilight must deal with the very real dangers of being percieved as an enemy as well as the nightmares of her arrival on 'Earth'. Can she overcome her own fears and the fears of her captors? Will the wayward unicorn's assistance be a boon or a curse to the 'humans?' Most importantly, will she ever find her way home?

"In short, it's a story of friendship and plasma rifles, with the emphasis on the friendship. The characters are well written, the XCOM setting is fleshed out very well, and the story is compelling. If you love XCOM, you'll love the story, but even if you've never heard of it, it's more than worth giving the first 3 chapters a read.

There's excellent action later on, but the real strength lies in the collision between the friendly and naive world of Twilight Sparkle and the desperate world of humans fighting a losing war for survival and willing to do anything to turn the tide."

--Arzoo

(XCOM/FiM crossover)
(Cover art commissioned by a friend and created by the magnificent FoxInShadow!)
(Original cover art by the amazing Carnelian can be viewed here!)
(Gore tag for blood and some violence)
(Many thanks to the studius OminousTen, Arzoo, xXFluttershyForeverXx and finally Setokaiva for giving my rambles a once-over)
(Now with it's own TV Tropes page! Get to tropin' folks!)