Both Link and Epona race to fight evil once again, however once they make it to the thing that is behind all the monsters that roam Hyrule, they get a big surprise. Once again, Equestria is threatened by evil and Link is once again called to the line of duty. Isn't he?
~~~
[NOTES]
I will add tags as I go along.
Cover image was made by Aeroflyte on DeviantArt, which can be found here, go check him out.
Now edited by these people: m2pt5 and Crescent Quills!
Based off of the Ocarina of Time timeline (which includes Majora's Mask), but takes a few aspects from Twilight Princess.
~~~

Ganon is defeated, and this time for good. However, other, greater evils have been confirmed to be working in Equestria, all of whom are preparing for the return of the greatest evil of them all. Witness several key events that take place in the five years that span between the defeat of Ganon and the War of the Three Worlds.

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At last, the second season of your favorite wind mage's adventures in Equestria is here!

Just as Vaati has fully settled down into his new life in Equestria, the unthinkable happens; Ganon appears and declares his intent to conquer. Now, with the Princesses forced into hiding, the Elements of Harmony scattered all across the land, and races all around Equestria suffering under Ganon's harsh rule, it is now up to Vaati, Twilight, and their friends to join forces with unexpected allies, recover the Elements, and take the fight to Ganon. And all the while, an even greater evil plots from the shadows, enacting a scheme centuries in the making that shall soon encompass two worlds that do not yet know the connection they share...

And as the adventure gets underway, one by one, the Mane Six begin to have nightmares...

Meanwhile, the Cutie Mark Crusaders must combat the darkest depths of madness and twisted illusions if they want to save Scootaloo from falling victim to the evil power that weaves the strings of all their fates...

Rated T for action violence, minor language, mildly suggestive themes, and some scary/disturbing images.

Five years have passed since the final defeat of Ganon, and life has more or less returned to normal in Equestria. But the fragile peace does not last for long. Without warning, a portal to Hyrule opens up in the Everfree Forest. Sensing an opportunity, Princess Celestia drags Vaati and company to a diplomatic meeting to establish an alliance between Equestria and Hyrule.

But Vaati's return is met with open, fierce hostility, and the sorcerer is subjected to a trial that will doubtlessly be biased. But even as the people of Hyrule and Equestria debate Vaati's fate, the servants of Majora strike at last, and all the races of Hyrule and Equestria must make a bitter decision; unite against the powers of darkness, or be consumed by the evil of Majora.

The War of the Three Worlds has begun. It all ends here.

(I HAVE DECIDED TO REWRITE THE EWM SERIES. THIS IS THE OLD VERSION AND WILL NO LONGER BE UPDATED.)

Ganondorf, King of Thieves, Lord of Darkness, Master of Evil and Wielder of the Triforce of Power, had long since grown thoroughly and completely bored with the path the gods had decreed for his destiny.

Time after time it was always the same, try and unite the Triforce, plunge the world into darkness for a time, search out and then kidnap Princess Zelda, watch his minions be defeated one after another and then finally battle Link for supremacy. Rinse and repeat.

All the while knowing that regardless of winning or losing, that no matter what he did or didn’t do, that in the end everything would end up repeating itself in another time and place afterwards, again, and again and again, in an utterly pointless never ending cycle.

Having decided that enough was finally enough, and refusing to continue to be a simple pawn at the hands of the gods, he vowed he would find a way to escape from his cumbersome destiny, a way to start anew far beyond the meddling grasp of the gods, a way to reach a realm upon which he could be the master of his own fate.

And after years of careful planning he had finally succeeded.

Sure, the fact he had to drag the know-it-all Princess and the green obsessed Hero along for the ride for his plan to work was a minor inconvenience, but he knew that sometimes sacrifices had to be made. And the fact that this new realm apparently decided to turn him and his two unwilling companions into miniature pastel colored ponies upon arrival also wasn’t exactly part of the plan, but he could cope.

After all, that was a negligible price to pay in achieving his deepest wish: freedom.

In this story Ganondorf, having grown sick of following through the motions his destiny placed before him as the eternal bad guy to be defeated time after time, seeks out to escape from his fate by breaking through the void between dimensions and running away from Hyrule to another realm entirely, Equestria, all the while dragging both Link and Zelda along for the ride.

Arriving long before the founding of the country, back before the events of Heart’s Warming Eve and at the highest point of the conflict between the Three Tribes, he and his two new companions will have to deal with a whole new world and it’s wonders and dangers. All the while this new magical world will have to learn to deal with its three new strange inhabitants in kind.

Just a warning: This is NOT a Displaced fic. All three main characters are the actual characters from the Zelda series that have been taken to Equestria due to Ganondorf’s master plan, and not humans turned into them.

Beta Reader: The Amazing Emtu!
Cover Art: The Incredible swagmu!
Proofreader: The relentless TranquilClaws! (From chp I - XXV)

Featured for the first time! 07/06/2018 to 07/11/2018

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Edit: Crossposting at Royalroad where I have the same username.

Vaati the Wind Mage has grown bored with the whole villain thing. He's trapped himself in a cycle doomed to repeat itself forever. Seeking a way to escape this miserable cycle of escape, kidnapping, and defeat, the legendary sorcerer inadvertantly teleports himself to another world entirely; a world populated by talking magical ponies who believe friendship is magic. Just how will the former villain survive this sugar bowl of a world? Will he end up learning a few lessons in friendship himself? One thing's for sure, retirement has never been this exciting.

AUTHOR NOTE: This story takes place in an episodic format. That is, it follows the style of the show in that every chapter is an 'episode', hence why they will all be lengthy. Some episodes will be canon ones with Vaati along for the ride, and others will be original where Vaati takes center-stage. The first episode takes place shortly after 'Griffon the Brush-Off'. Vaati is from Legend of Zelda and is property of Nintendo. You already know who owns FiM.