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My favorites of the Mane Six and CMC!

Best Ponies:
1. Sweetie Belle
2. Pinkie Pie
3. Twilight Sparkle
4. Scootaloo
5. Rainbow Dash
6. Apple Bloom
7. Fluttershy
8. Rarity
9. Applejack

Fantastical Fables of Fantastic Fantasticalness!

Asylum When Twilight Sparkle went to bed, she had friends she loved and a life she enjoyed. But she awoke to hospital gowns and padded restraints. And the doctors, they keep telling her that she is sick and none of it was real. They’re lying, right? by Daemon of Decay 191,184 words · 4,912 · 121
Background Pony "My name's Lyra Heartstrings, but you won't remember anything. Listen to my symphony, for it by shortskirtsandexplosions 432,377 words · 6,816 · 243
Five Score, Divided by Four As a fan of the show, I always loved Rainbow Dash and her cutie mark, but I never wanted it to appear on my leg! Now that it has, all sorts of things are getting weird around here. I'm a guy, not a mare! Cartoon ponies aren't real... right? by TwistedSpectrum 277,593 words · 4,092 · 212
Past Sins Can Nightmare Moon, reborn without her hate, ever escape her past? by Pen Stroke 201,810 words · 12,544 · 382

Terrific Tales of Tremendous Talent!

Vinyl and Octavia: University Days Vinyl Scratch and Octavia go to university. by DawnFade 71,075 words · 8,044 · 128
The Serenade of Silver Belles After a falling out with Diamond Tiara, Silver Spoon discovers she has feelings for Sweetie Belle. by Your Antagonist 76,961 words · 1,553 · 39
The Battle of Fort Book Twilight Sparkle is General of Fort Book and must defend it at all costs! A story of filly Twilight by PinkamenaPiePrincess 1,108 words · 4,318 · 65
The Best Night Ever Grand Galloping Gala meets Groundhog Day time-loop by Capn_Chryssalid 53,935 words · 5,446 · 82

Awesome Accounts of Amazing Awesomeness!

Discordant When Discord finds a crack in his prison he begins whispering to a lonely Scootaloo. by ezra09 42,596 words · 1,340 · 23
Why Am I Crying? The CMC each deal with their emotions when their hated enemy, Diamond Tiara, dies in an accident by Rated Ponystar 64,552 words · 1,584 · 37
Suddenly, a Filly! Twilight woke up and found out she's turned back into a filly. by Pomfiance 19,892 words · 1,311 · 30
One In A Million Scootaloo finally finds her special talent. It's the worst week of her life. by ocalhoun 52,416 words · 1,592 · 145
The Keepers of Discord Being a statue can drive you mad, yes? by Hoopy McGee 11,445 words · 6,640 · 90