Truth is the first casualty of war.

The world is in flux; new ideals, groups and technologies permeate every level of society in this age of discovery. The field of augmentation has allowed ponies to improve themselves in ways that were unthinkable a generation ago. Yet, for every benefit, there is an inverse. A griffon civil war rages on the borders, feeding the profits of mercenary companies. Rising populations have forced the rich and poor ever further apart. Harmony is dying.

Mortally wounded after a fatal attack on her laboratory, an earth pony researcher is augmented against her will and sent out into a chaotic world in search of answers. But as her quest unravels this chain of events, she discovers an ancient conspiracy that will shake Equestria to its very core.

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TVTropes Page

In the distant future of Equestria, Luna is recalled to Canterlot against her will to participate in a court case that will decide the future for sentient machines.

This story is a sequel to Everfree

When the world finally seems to have fallen silent, the darkness shall always rise to swallow the light. Two agents of Canterlot's most secret organization have gone missing while on a critical assignment. Fearing for the safety of Equestria, Captain Fleethoof is drawn into an intense investigation surrounding weapons trafficking, violent crimes, a notorious family, and one very enigmatic special agent. Pulled into a web of betrayal, corruption, treason, and violence he never knew existed, Fleethoof begins to find out just how deep the rabbit hole goes—and what the return of an old foe means for the future of Equestria.

Special Agent Bentgrass belongs to Jake The Army Guy.
Pre-reading and editing also done by the spectacular Jake The Army Guy.

This story is a sequel to Hard Reset

After the events of Hard Reset Twilight's life and mental well being are slowly returning to normal. Her recovery is cut short, though, when a letter arrives informing her that the time loop spell she cast is causing severe damage to space and time itself. In over her head, Twilight tries to summon anypony who will know how to fix it. The pony she gets is the last one she ever thought she would meet... and nothing like she expected him to be.

Available in Spanish thanks to dgs1993
Series TV Tropes page

After a long day of flight practice with Scootaloo, Rainbow Dash discovers the filly knows next to nothing about preening and takes it upon herself to teach her.

Warning: May Contain Feels and/or D'aww moments.

Featured on FIMFiction on 7/20/2013. Yay!
Featured on EQDaily on 09/12/2013 Double Yay!
Reading by TheLostNarrator (excellent!): Here
Reading by DRWolf: Here
Reading by Joehighlord: Here
Riffed by Draklox: Here
Korean Translation: Here
Spanish Translation: Here
French Translation: Here
Chinese Translation: Here

In the final days of her life, an exceptionally faithful student muses on the subject of her perfect and immortal mentor Applejack.

Now with Spanish translation by Spaniard Kiwi!

Seriously, a lot.

(Now with a Spanish translation by the generous SPANIARD KIWI!)

This story is a sequel to Skyfall

From the author: Chapters with ♫ have music to accompany them. Check the Author's Notes at the bottom.

Following the events of Skyfall, Shining Armor has moved to reform the Royal Guard into the intimidating fighting force it was always meant to be. Skyfall Team is on hiatus, a long-earned respite. For the first time since the Griffon War, Equestria is recovering and growing substantially, no longer living in the shadow of danger.

But when an allied unit goes rogue and new threats loom from the shadows, Equestria's harmony is thrown into international turmoil that could bring about a world war between old enemies and allies. It is left to Skyfall Team to cover up the incident, and eliminate the defectors, before chaos can erupt into full scale conflict that could spell armageddon. Facing off against their comrades, Skyfall will learn that sometimes the toughest fights we face are against our own brothers.

All characters belong to their respective creators.

Rarity moves to Canterlot. Rainbow joins the Wonderbolts. Fluttershy and Twilight are shut-ins, to an extent. The friends remain so, but they have lost some of the freshness of their connection. Rarity, in her new home, invites all of her dearest friends to join her in the ancient city. Twilight struggles with her attraction to Rarity, long a secret, while another pony's plan comes to fruition.

This story is a sequel to The Griffon War: A Soldier's Memoirs

Some time has passed since the Griffon War ended and the Equestrian Army returned home. Peace and harmony has returned to the land. But war changes everything—even when that is war itself. From the ashes of the old military traditions, Skyfall Team is born. Luna's experimental group seems promising: tactical, advanced, intelligent, and powerful—and about to be put to the test, when the Royal Family is threatened from their own home. With little information to go on and short of time, Skyfall Team's trial by fire may leave the Royal Family in terrible danger that could cost them their lives.