When Zecora falls ill with a deadly sickness, it falls to the Doctor, Twilight, and Fluttershy to find a cure in her ancestral homeland Zebrica. All the while dodging the twisted machinations of an old foe from the Doctor's past.
Twilight, Rainbow and Applejack travel 3000 years into the past with their new friend the Doctor, to the ancient city-state of Roan. They meet the famous Leonard DiHoovsie, and find themselves embroiled in a deep mystery with dark implications.