When a black and red alicorn appears in the Everfree Forest, Twilight and the others are sent to investigate. Unfortunately, this visitor is an incomprehensible mess and quickly drives the girls insane.
Starlight Glimmer destroys Equestria when she learns how she actually lost her soulmate, Sunburst. Fixing her mistake, she learns time travel can lead to a revelation of the heart and the renovation of harmony. (An alt-ending to The Cutie Re-mark.)
When a pirate named Captain Jack Silver steals the Elements of Harmony, it's up to Twilight and the rest of the Mane Six to get them back. Soon enough they all find themselves on a swashbuckling adventure to find the SEVENTH Element of Harmony.