I see stories, where lyra like humans and bonbon hates them.
but are there any stories where bon bon also likes humans?
or any stories where lyra doesn't like humans (might come to like them later) but bon bon likes them?

If that was a story, it would be some backwards mirror universe idea!

3782196 I think what you're looking for is "Lyra Hates Hands" or something like that. But it's kind of inapporpiate, and it's short and... okay.