Here's the place to give run downs on any character that you use that isn't a simple mook or one of your chosen group. These are basically any antagonist that sticks around or any friendly character, such as townsponies, that are in an area and can be used to set up either group or personal plot points/arcs.

Wonderbolts 1st Squad

Soarin'

Former second in command of the Wonderbolts under Spitfire, Soarin' is a male pegasus, light blue-grey coat, darker blue mane. Before the storms he was known for a fun loving nature and a love of pies, unfortunately with the disappearance of his captain, command dropped heavily on his withers, along with the loss of several wing mates. After the replacement of virtually all surviving Wonderbolts along with the take over of Cloudsdale, he teamed up with Stratus and the rest of the survivors to try to restore Cloudsdale to how it was under Celestia's reign

Fleetfoot

Soarin's second, Spitfire's third in command, Fleetfoot used to be respected as one of the faster Wonderbolts, particularly among those on the racing circuit, unfortunately the storms brought all that crashing down for her and her colleagues. Now she's a member of the resistance, bearing the scars from seeing more than a few of her comrades fall to the storms and the things they created.

Misty Fly

A light yellow pegasus with a blue mane, Misty is actually one of Nightshade's two younger sisters, or rather she's Nightshade's half sister. As a Wonderbolt, Misty always knew she was a flier, though she was never the most aggressive of the group, she, like Soarin' and Fleetfoot, managed to survive the mess in Manehatten and make it back to Cloudsdale before the group was disbanded having taken greater than 25% casualties in the storms. Since then, she has been trying to restore Cloudsdale to how it was before the storms erupted, along with those of her friends that survived. She might have a case of hero worship around Spitfire, and a possible crush on Charger.

Rapidfire

Firestreak

Shadowbolts 1st Squad

Stratus

Charger

Starry Skies

Ghost Shadow

The lone changeling in the group, Ghost Shadow spent most of his time in pegasus form, living as a cat-burglar before being recruited into the Shadowbolts. He wasn't among the group in Manehatten when the storm hit there, instead he was trying to find the hives in the wastes beyond Equestria. Fortunately he made it back in one piece, unfortunately it was just in time to find out that his position in the Shadowbolts had been striped from him, along with the protection it offered, leaving him an outcast from the only home he had known. Eventually he managed to find his way to the rest of the first squad, those that survived, and joined them in trying to free Cloudsdale. He also has at least a crush on Blueball.

Blueball Blitz

The youngest of the Shadowbolts, Blueball was an ordinary weather factory worker practically right out of school when she was involved in an accident at the factory that infused her with the power of lightning along with several chemicals usually used for rainbow production. The result burned her fur and mane azure blue and amplified her speed to at least triple what it was initially. As such, she is one of the few ponies likely to be able to force Rainbow Dash to pull out her signature move in a race or give Fleetfoot a run for her money. Unfortunately, the accident also left her speaking at least twice as fast as most ponies, making her difficult to understand, particularly when she's excited. Due to her age when she joined, most of the team sees her as the younger sister. She does, however, like Shadow as he's one of the ones willing to give her his time without restraint. She tends to see Spitfire and Nightshade as mothers for a similar reason.

Civilians

Daisy

The younger sister to Roseluck and Lily, she was left behind in Equestria when her sisters disappeared during the Manehatten Storms. Without them and with so many new monstrous creatures and events occurring, she retreated into herself a lot, leaving her feeling scared and lonely. With few friends left, and the appearance of people willing to hurt others, she ended up as one of those under the thumb of 'protection providers' who weren't the local garrison.

Berry Punch

Lightning Dust

Antagonists

Scarlet Diamond

Zecora
Twilights teacher in the art of potion making and other things I have yet to decide on.

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Chrysalis

The former queen of a single hive in the Changeling Alliance, Queen, now Empress, Chrysalis, is the undisputed leader of the Changeling Empire. This is largely due to the fact that she was the only Matriarch strain of Changeling to survive the storm, forcing almost every Changeling left to be slaved to her will. With a unity unseen by her kind in the whole of their history, Chrysalis expanded deep into Equestria and the surrounding lands, until she was finally stopped at the fortress city of Hoofington. Now she sits on her throne, waiting patiently until her time to renew her conquest of the world rears its head again.