Warning, spoilers ahead! · 7:29am Jan 28th, 2013
So here's the general skeleton I had for MoaLT. A lot of the events that occurred in this version do stay in the current one, so don't read this if you care about spoilers.
Twi = Twilight Sparkle
AJ = Applejack
RD = Rainbow Dash
FS = Fluttershy
PP = Pinkie pie
Rar = Rarity
M6 = Twi, AJ, RD, FS, PP, Rar
Cha = Frequent Change (OC)
Str = Streak (OC)
Red = Red Group Leader (OC)
Blue = Blue Group Leader (OC)
Derp = Derpy Hooves
Yellow = Yellow Group Leader (OC)
Green = Green Group Leader (OC)
RL = Red, Blue, Green, Yellow, Derp, Str
MRL = M6, Str, Derp, RL
NRed = Nurse Redheart
RoG = Royal Guard
Lun = Luna
Cel = Celestia
Cit = Citizens
Reb = Rebels
NP = Newspapers
Prologue: The formless darkness scene. Str.
Chapter 1: Manticore chase scene, battle scene. Twi, AJ, RD, Str, Cha.
Chapter 2: Hospital scene. NRed, Twi, AJ, RD, Str, Cha.
Chapter 3: Celestia scene, fleeing scene. M6, Str, Cha, Cel, RoG
Chapter 4: After escape scene. M6
Chapter 5: Rebel planning scene, Mane Six invasion scene. RL, M6
Chapter 6: Memories prologue scene. M6, Str
Chapter 7: Memory – Rarity scene. Str, Rar, Cel
Chapter 8: Memory – Applejack scene. Str, AJ, Cel
Chapter 9: Memory – Fluttershy scene. Str, FS, Cel
Chapter 10: Memory – Pinkie scene. Str, PP, Cel
Chapter 11: Memory – Twilight scene. Str Twi, Cel
Chapter 12: Memory – Rainbow scene. Str, RD, Cel
Chapter 13: Memory epilogue scene. M6, Str
Chapter 14: Gathering the rebellion scene. MRL
Chapter 15: Cleansing scene. MRL, Lun.
Chapter 16: Speech to the masses Str, Reb, Lun
Chapter 17: March on Canterlot scene. MRL, Reb, Lun
Chapter 18: Begin invading scene. Cit, Reb, MRL, RoG, Lun, Cel
Chapter 19: Tough battle scene. Cit, Reb, MRL, RoG, Lun, Cel
Chapter 20: Boss Battle scene. M6, Str, Lun, Cel
Epilogue: Rebuilding scene (AKA letters scene). M6, Lun, Cel, NP
Now try squeezing in recruiting the changelings, fighting off griffin raiding parties, finding and recruiting sea ponies, and even more events that I wanted to do for this story. It was at this point I realized that there was just too much I wanted to do for this story. You can't have recruiting changelings, fighting griffins, discovering and recruiting sea ponies, cleansing Luna of mind control, raising a rebellion against a tyrant, and making friends with the mane 6, yet still have enough room to ship a character with an OC AND have enough energy to write Pinkie's parts. It just doesn't happen with any amount of quality without reaching "Griffin the Griffin" lengths, especially for a first dip into writing fanfics.