I just read through the first Non-Bronyverse story and I was wondering if there was any particular recommended order for reading the others? I'm really enjoying the stories, but I don't want to mess anything up in terms of reading order. Thanks in advance!

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ok so you just read No, I Am Not A Brony, Get Me Outta Equestria! then read Twilight Researches Humans then it splits between TD's journey around the lands outside of Equestria or TD becoming an Alicorn if you want to read about his journey read Wanderings of a Non-Brony than The Life of a Non-Brony for him becoming an Alicorn than TD the Alicorn Princess, than The Prince and Resurgence

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The main series:
No, I'm not a Brony
Wanderings of a Non-Brony
Life of a Non-Brony

Then all the rest are spin-offs. There's several that are connected, like the one where TD becomes a teacher is connected to the TD Alicorn series.

Main Series:
No, I'm Not a Brony
Wanderings of a Non-Brony
Life of a Non-Brony

Alternative Universe:
Non, I'm Not a Brony (Should still read to get a basic foundation of the character)
TD Alicorn Princess
The Prince
Resurgence

The rest are side-stories you can read at your lesiure