First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

Who is Discord?
What is he?

Long known as the mischievous Spirit of Chaos and Disharmony, he has been scorned by pony-kind for as long as any pony alive remembers. But where did he come from? Why does he do what he does? What's his side of the story?

None know save the two that were there when it all began, and Discord himself.

This is the story of Discord, Celestia, Luna, and Equestria as you never knew it, as told from the perspective of Joseph, the human that unwittingly found himself in the middle of an age-old battle for power and justice. This is the story of the atrocities hidden in time and forgotten by the masses, yet that still define the world around the Elements of Harmony. This is a Discordant Tale.

Note: This story only takes into account canon that has been established by the first two seasons of the show. Elements introduced in Season 3 may or may not be incorporated into the story, but not necessarily in the same context in which they were first used on the show.

What do you do when the world itself seems to conspire against you, where no matter how hard you try; you are constantly pushed back down? Do you stand against it as a lone light in the dark? Or do you too fall into the abyss and join the masses? This is the story of my life, or I should say this was the story of my life before it was taken from my cruel and heartless world and put into one that was just as cruel and heartless but with new rules and a new body. My attempt at a story in the Chess Game of the Gods ‘verse that seems to be expanding daily. Picture is not mine (three cheers to Google for the artistically inept)

After Chrysalis failed to conquer Equestria, she was shamefully stripped of her title of "Queen of the Changelings".

Their people now leaderless, the Changeling race now finds itself in a unique situation. In the struggle for power, one Changeling seizes the attention of his people. Can he overcome his nature, and the nature of his people, to lead them into a better future?

Love comes in many forms: love for your family, your friends, your country, and your people. Twilight Sparkle has experienced it all, except one kind. True love, the love you stake the rest of your life on. As the royal wedding of her dear friends draws nearer, she begins to feel the desire for a love of her own.

Troubled and lonely from the newly-revealed gap in her life, she discovers that sometimes love is found in the strangest of places.

Takes place in the years after the epilogue of Visionary. Special thanks to _Medicshy for his editing and feedback on each chapter!

Conjuration is a lost art in Equestria. Celestia is bored, and decides to learn some summoning spells. She summons an otherworldy creature, but will it be anything like what she expects? A non adventurous HiE. Mostly just learning about interactions. I'm just gonna roll with it, and add tags an ratings as the story unfolds.

I'm Griffin, not much else to it. I've been bullied most of my life, which left me bitter and sarcastic. I'm a closet brony. What? You think I'm just gonna go out and tell a world that hates me that I watch a cartoon intended for little girls? I don't feel like giving the punks at school any more ammo. That's when cosmic powers decide I need to take a trip to my favorite fantasy land. But all is not sunshine and rainbows and it certainly won't be after I'm done with it. Equestria from the point of view of an extremely pissed off teenager, with a twist. Rust, the author of 'The Ballad of Echo the Diamond dog' is awesomesauce enough to have a cross over between our stories. Carnelian is a boss when it comes to art. Part of the 'Chess Game of the Gods'.

Violence, gratuitous swearing, and sexual themes. Reader discretion is advised.

Lark Wolfe is 25 years old and he has a terrible fate. Bitten by a werewolf, he now spends his life traveling from town to town as a bard, trying to find a way to cure himself. Something happens, he finds himself in Equestria, and then more things happen. There is going be to a lot of music in this, as he IS a traveling violinist. I'll put hotlinks in the story to whatever he's playing. Also, Lark speaks with a very slight British accent. it's most entertaining to read if you think that way.