When Twilight Sparkle slipped beneath the covers last night, everything had been fine. She had friends whom she loved, a teacher she adored, and a bright future ahead of her. But when she woke up, her blankets and quilts had been replaced by hospital gowns and padded restraints.

Everything is wrong and nothing makes sense; even her friends have changed. The doctors keep telling her that she is sick, that none of it was real and that it was all in her head. Yet she remembers a life far beyond the hospital walls. She couldn't have made it all up on her own. They must be lying… right?

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Art:
Asylum Cover by conicer
Twilight and Twilight Smiles by dreamingnoctis
Mirror Twilight and Plague Doctor by Jaestring / BloodGoldWings
Twilight Smiles and Doctor AJ by conicer
Nurse Ratchet and Silas and What's in the mirror? by Archonix
Doctor AJ Sketch by Archonix | Colored and vectored version by ReFro82
Twilight's Asylum by Khan the Cake Lover
Smilight by HappySwitch
Twilight Waking Up by Dombrus
Fan Art by toxicdemon10
Asylum Twilight by Madness-With-Reason
Asylum Fluttershy and Asylum Ch 26 by Downburst-Backspace
Twilight and her Twin by v747
Birdgirl by sirValter

Readings and Videos:
Asylum Animated Trailer Video by formuladash
Reading by Gammarobot (SugarCubeRadio): All Chapters Here
Reading by Ender Brony: All Chapters Here
Reading by VisualPony: All Chapters Here
Reading by MelancholyIguana: All Chapters Here
Fan Trailer by Kaidan: Asylum FanFic Trailer Cuckoo's Nest

Sanctuary by Kaidan
Broadhoof Files: Dr. Humors by TypewriterError
Broadhoof Files: Corporal Phalanx Spear (Ret.) by Phalanx Spear
A Hearth's Warming Tragedy by Seven Fates

A special thanks to Breath of Plagues, Rex Ivan,
ChudoJogurt, Cynewulf, Death the Kid, Selbi, PrinceDolph, Blahman2816, Queue, and Gage!

Axan Zenith - Dr. Dreamer
Dratini4 - Way Finder
psychicscubadiver - Bright Mind
Velkaden - Dream Chaser
Reese - Silver Glow
Viola Heartstrings - Clover
Archonix - Spinney Whiteacre

Twilight Sparkle has too much magic, and it will take her decades to learn to control it. Her spectacular loss of control during her entrance exam only proves that fact. She is a danger to herself and others.

After Sunset Shimmer’s disappearance, Princess Celestia needs a new student to bear The Element of Magic to defeat Nightmare Moon. With all of Equestria at stake, Twilight Sparkle…is not the pony she needs.

Princess Celestia seals Twilight Sparkle’s magic with the distant promise of one day teaching her.

But there are two diarchs of Equestria. Amidst a lucid dream, an offer is made.

“Hello, Twilight. Would you like to be my student?”

Cover art provided by Lafiir.

Twilight goes with Rainbow to watch her race in Cloudsdale only to suddenly find herself being 'wooed' by Thunderlane.

Saw the cover art and decided to make a story around it with permission from Ravenpuff

9/6/14 Featured!
I don't really know the meaning of this. I was going for a minimum length little thing because I saw the cover pic. Then it gets featured. Maybe it means I can die peacefully now. Except people want me to write more. Dunno what to do with my life anymore.

Many suggestions later. *Dramatic sigh* I suppose I'll switch this to incomplete. :)

YouTube reading by Captain Bron3y!

New chapters edited by the fantastic AnonponyDASHIE

This story is a sequel to Dusk's Dangerous Game

Twilight Sparkle, known to all but the three Goddesses as Lady Everstar, the Evening Sage, has ruled over her kingdom for nearly five centuries with all the wisdom and grace of which she is capable. Her lands are wild and exciting, the prospects good for those with brilliant minds and daring hearts. But now something has changed in the Evening Kingdom, something has changed the balance of power so profoundly that even Twilight herself cannot tell how events may unfold.

Across the ocean, an ancient evil is stirring, its dark hunger can finally be realized. Its servants are many, brutal, and cunning. They are found among the lowest of lows, and the highest of highs. With the balance of power so disrupted, it is at last time for their shadowy plans to come to fruition, to cast off the darkness and strike against the night.

It will take the power of goddesses, magic both familiar and ancient, and the most unlikely of heroes to save not only the Evening Kingdom, not only Equestria, but the entirety of Creation as we know it.

Sequel to Lines and Webs and Dusk's Dangerous Game. Knowledge of the previous stories is not needed, but reading them is, of course, encouraged.

Followed by Courts of The Magi.

This story is a sequel to Days of Wasp and Spider

Believed dead by their creators, the ponies that will become Celestia and Luna have broken their mental conditioning and escaped into the wilderness. Here they plan the revolution that will free all ponykind, knowing that it is only a matter of time before their ruse is discovered.

Back in their underground arcologies, the ponies' erstwhile masters deal with the consequences of the escape, all the while unaware that something lurking at the bottom of space-time wants them all dead.

A Soot-Covered World, book 2.
Canon species only/no humans.
This story has nothing to do with the Holocaust.
Art by InLucidReverie, used with permission.

SF (canon species only; no humans) Ponies were magically and genetically engineered to be the perfect servitor race. They are powerful, adaptable, intelligent and completely under the control of their creators. A laboratory accident frees one such pony from her mental chains, but how can one mare save herself and the rest of her kind if she doesn't even know she's a slave?
This is not the Equestria you know and these are not your little ponies... not yet, anyway.

Tags: Adventure, Diamond Dogs, Gryphons, NO HUMANS (did I mention that already?)
Other tags: historical, mind control, Clarke's 3rd Law, excessive use of high energy physics, before they were famous.
Detailed review by PaulAsaran.
Cover art by endrome , used with permission.
Russian translation (partial -- 'unofficially' completed in the comments)
A Soot-Covered World, book 1.

Rainbow Dash, best pony, fastest flier in Equestria, all around awesome mare, was called upon to help with the wedding of her friend's big brother. And hey, she never leaves her friends hanging! Of course, when it turned out some kind of bug thing had replaced the bride, Rainbow was more then ready to fight. Heck, even after it seemed all hope was lost, the pegasus refused to give up.

So when she saw Shining Armor charge up a final spell, she smirked.

But when that spell reached her and flung her against the wall, her smirk devolved into shock...

Cover art is a combination of Deception is Magic vector by Helios and Sonic Rainboom Version One by SkyRings.

A farmer, a teacher, a student, a family.
One morning, they woke up and realised something was missing.
But what, exactly, has been lost?

Chapter 2 - Deleted Scene
"What Do Ponies Truly Fear?" - Essay

This story is a sequel to The Chaotic Touch of Harmony

It has been nearly a year since ponies and Mions appeared on Earth with humanity being divided in how to deal with both. While the ponies in the newly formed town of Trinity work to establish themselves, the rest are scattered throughout the planet while trying to find their place in the world and the Cult of the Koridost is quietly ramping up their genocidal campaign against humanity.

Will Discord’s vision of humanity’s ruin come to pass? Or will his less than direct intervention allow the planet to see a brighter tomorrow?

It is highly recommended to read the first arc because this is a direct sequel and many plot elements may be confusing without previously established context.

Again, thanks go out to Quite Quiet for his editing work.

Excellent cover art by Tulip

It's been two and a half years since Twilight Sparkle returned from the other world, leaving Sunset Shimmer in the company of the alternate group of friends she made. However, not all has gone well for her one-time rival in the other world. On the night of the 30th moon, Sunset emerges from the mirror and uses an ancient relic to switch their bodies. Alone in the care of Sunset's overbearing ex-tutor, Twilight uncovers the forgotten past that drove her rival to such desperation, while back in Ponyville, Sunset struggles with Twilight's lifestyle clashing with her own dreams.

Proofreaders: RTStephens, Winter Solstice, The Albinocorn, Dartrunner and NightWolf289.
Cover art: FallingRain22

Featured by Twilight's Library September 2014.
Featured on Equestria Daily