Rainbow Dash wakes up with a searing pain in her head fifteen days after a serious accident. Her friends tell her that she was in a coma but a series of strange visions make her think otherwise. Why does she know of things that don't exist in Equestria and who is this man that keeps appearing in her dreams? Only a certain princess holds the key to Rainbow Dash finally finding peace.

This story is a sequel to Doctor Whooves Episode 14: Work of Fiction

The Doctor, Twilight, and Derpy finally arrive in the Doctor's universe, and just in time for Christmas. The Christmas cheer ends, however, when a group of odd enemies attacks a cozy country hotel. In order to defeat these strange foes, Derpy will have to face something from her past and Twilight will have to help the Doctor reunite with a lost friend.

This story is a sequel to Doctor Whooves Episode 12: A Dalek in Celestia's Court

The Doctor has been living in Ponyville for several weeks now and Hearth's Warming Eve is just around the corner. However, the peace is shattered when a mysterious stallion from another dimension named Clockwork appears. As the a dark nightmare wreaks havoc, Twilight is forced to examine her true feelings for the Doctor and Clockwork must face the fate of his wife, Twilight Sparkle.

This story is a sequel to Doctor Whooves Episode 13: Clockwork and the Doctor

The Doctor, Twilight, and Derpy head off to the Doctor's home dimension, but something goes wrong and they instead end up in a dimension where they were merely fictional characters in television shows. Things get even more complicated when they end up separated at a certain My Little Pony convention alongside two fans and a mysterious figure with an odd arsenal of powers appears.

This story is a sequel to Doctor Whooves Episode 11: Parents' Day

The Doctor, Twilight, Derpy, and the others return to 1002 and arrive right in the middle of Canterlot a mere five minutes after their original departure. They arrive to find a troubled pair of alicorn sisters and an eccentric stallion who knows the Doctor well. However, they also come across a Dalek who has named Princess Luna as its next target.

This story is a sequel to Doctor Whooves Episode 4: Young Armor

The Doctor and Twilight have picked up a mysterious mare named Matilda who seems to know them pretty well. While they try to uncover Matilda's secrets, they find themselves in Equestria 100 years prior to the birth of Princess Celestia. Here they come across a kind and caring King Discord and his wife, Lily, who holds the key to his descent into chaos.

This story is a sequel to Doctor Whooves Episode 5: Before the Chaos

The Doctor finally manages to return Twilight to 1002, only to discover that he's brought her back a little bit late. As the suspicious citizens of Ponyville turn on the Doctor, a strange army led by an old foe invades the town.

This story is a sequel to Doctor Whooves Episode 7: The Good, the Bad, and the Derpy

The Doctor, the Mane 6, Derpy, and Spike travel to 4376 and find themselves on a luxury spaceship called the Queen Philippine, which is currently on its maiden voyage. What starts off as an interesting adventure turns into a fight for survival when the ship loses power and becomes host to some unwanted passengers.

This story is a sequel to Doctor Whooves Episode 9: Triple Rainbow

It's been a month since the Mane 6, Derpy, and Spike started traveling with the Doctor. Things suddenly take a turn for the worse when a foil from Twilight's past mysteriously appears in the TARDIS and they all end up trapped in a seemingly-abandoned asteroid base that has a bad infestation.

This story is a sequel to Doctor Whooves Episode 8: Maiden Voyage

The TARDIS brings the Doctor, Twilight, Derpy, and the others to the Griffin Kingdom in the year 1021. Here they meet a 38-year-old Rainbow Dash training for the Gailenean 1000. Meanwhile, a third Rainbow Dash from an alternate reality appears but with much darker goals in mind.