The unthinkable has happened. A new Draconequus has emerged, apparently intent on plunging Equestria into chaos once more. To make matters worse, Pinkie Pie is nowhere to be found, forcing Twilight and the others to scramble to find a way to defeat this new threat without the Elements of Harmony.

Meanwhile...

After strange dreams, Pinkie Pie awakes and finds herself in the body of a Draconequus. Between strange new powers that she can't control, and, for some reason, an inability to communicate with other ponies, Pinkie finds herself alienated from her friends... but finds help from an unexpected source.

It has been several months since the disappearance of Twilight Sparkle..

One night, after watching her sister raise the Moon and set the heavens alight, Princess Celestia begins to bed down for the night, only to be interrupted by portal forming in her room. From out of the portal comes none other than Twilight Sparkle, garbed in strange armor.

Princess Celestia, along with Luna, Cadence, and Shining Armor, are overjoyed by the Element of Magic's return, but are justifiably curious as to where she had been and what she had been doing. And so, Twilight begins her tale. A tale of survival against impossible odds. A tale of a people fighting for the most basic right of all sentient beings. The right to exist.

Trixie returns to Ponyville some time after Boast Busters after encountering an injured filly on the road. After the filly is checked into a hospital, some complications prevent her from leaving, and she's forced to linger around the town for a while longer.

Shining Armor and Cadence's spell reveals something completely unexpected as it expels Chrysalis and her changelings out of Canterlot: A secret kept from everypony for several years...

Now with a TV Tropes page! Warning: Will Contain spoilers.

Mort, also known as the Pale Pony (of Death), has been tasked to take time off from his rigorous duties of reaping souls. Seeking guidance, he is directed towards the town of Ponyville, to learn about the magic of friendship from Twilight Sparkle and her friends. All he needs to do is keep his true nature a secret. That shouldn't be too difficult...right?

Special thanks to Specter-Von-Baren and Pyrite Foolsgold for their help in proofreading and editing this story, as I really needed it. Additional thanks to Pilate, Chuckle5, Unimpressive Vagaries and Admiral Biscuit as well! Couldn't have done it without all their help!

Credit for the title card goes to Siansaar, AKA Carnifex.

For another excellent take on Mort, check out Sip's version!

The Sangheili are a saurian species of fierce, proud, strong, agile, intelligent warriors and skilled combat tacticians. They are named after their home planet, Sanghelios, and are known to Humans as Elites, due to their adeptness and skill in combat. The Sangheili formed the military backbone of the Covenant for almost the entirety of its existence, they fear very little, and take great pride in an ancient, honor-laden code.

However, this group of Spec Ops Elites, Grunt, and Kig-Yar have crashed landed in Equestria by way of a slipspace drive being detonated in the middle of the ship they were heading to, the 'Glory Upon Salvation'.

Now they have to find a way off the planet and back into space so they can continue their journey to the Blessed Path... by dropping hot plasma on human worlds.
But will they want to, when something they revere tells them otherwise?

Recently tagged as Teen for implied violence, and (maybe) minor gore in future chapters.

Spartans never die, they're just missing in action. This has never been more true for Jorge-052 as, after activating the slipspace drive that was supposed to kill him, he is instead flung into a strange world where war is but a distant memory. Will the aging soldier be able to adapt to this new peaceful planet? Or will his only salvation be found in finding a way back to his own chaotic universe?

(It's my first time, so be gentle)
Now featuring a TVTropes page by Sabo88

After an unfortunate incident involving Rainbow Dash and herbal tea, Fluttershy wakes up one morning to discover that she has turned into a rabbit! With her friends unaware of her plight, Fluttershy must turn to Angel bunny to guide her on her quest to restore her original form. In the process, she is given the oppurtunity to experience everyday life in Ponyville from a whole new perspective, and discovers that there is much more to her friends' pets than she ever expected.

Cover art here if you'd like to compliment the artist: http://mischieflily.deviantart.com/#/d4wfix3

One Piece X MLP Crossover

A emergency trip to Zecora's leads Fluttershy to find a strange pony with a straw hat. Unfortunately, he scares Fluttershy off with his talk of eating other animals. The strange pony's arrival in Equestria sets off a chain of events that threaten plunge the peaceful kingdom into an all out war. Twilight and her friends, along with the new pony may be the only ones who can unravel the mysteries that surround Equestria and save it from falling apart.

Now with TV Tropes!

New Cover Art by Droll3

After a summoning mishap, six champions from Runeterra's League of Legends arrive in Equestria. At first, they are focused entirely on getting home, but soon find out that it might be more complicated than they thought when Discord decides that he can use them for his own ends. Continued in The Redemption of Jericho Swain