This story is a sequel to The Dark Ones

Many years after the destruction of Equestria, Twilight Sparkle serves the Imperial Inquisition in its war against those responsible. Having thought her past safely buried, what will become of her when it returns with a vengeance?

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After a tragic accident, a human ends up in Lord Tirek's body, as part of an attempt to reform the villain after his recent escapades. While the hero of our tale is trying to make sense of his new surroundings, the rest of Equestria thinks that the most terrible threat that their world has ever seen is back...
And the powers that be are definitely not happy about it.
New Cover Art By Shadow Bolt

This story is a sequel to Lost into Shadow

The impossible has happened, through all the pain and darkness, Twilight Sparkle succeeded in her impossible mission...mostly. King Sombra is still plenty rough around the edges, but despite being an old dog he's making an effort to learn new tricks. Where will this new way of life take him? He has absolutely no idea, but with his queen to guide him, what could possibly go wrong?

A flip of a coin. A twist of fate.

Twilight Sparkle, younger sister of Princess Celestia's personal student, Shining Armor, grew up listening to her brother's bygone dreams of joining the elite of the elite: The Royal Guard.

Now, fresh out of the Academy, this young mare is ready to prove herself equal to the deeds of the great soldiers she read about as a filly. Too bad the princess she ends up protecting isn't Celestia.

There are consequences to every action, but we can't always predict what they will be. I stay up at night wondering what I could have done differently, but I've already paid the price for my actions. All I can do now is deal with the consequences, and I've got several great friends to help me do it.

Edited by: Neko Majin C, 314, Kleora, Dash The Stampede

King Sombra’s dark influence was obliterated by the Crystal Heart, and the villain is well and truly dead. But when he attempts to steal the afterlife of an innocent victim, a human spirit is left hurtling towards Equestria, where this unfortunate soul is revived into the only vessel available: the reconstituted body of King Sombra himself.

Thus, a cheerfully oblivious alien is crammed into the form of the most evil and malicious being Equestria has ever known. Not that Shining Armor and Cadence know this, of course. As far as they are concerned, the King is back and he’s lost his fricking mind.

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A thousand years ago, Princess Celestia banished her sister to the moon, that much we know. What wasn’t known, and what Celestia kept secret was that before her banishment, Luna had given birth to a foal. Now a thousand years later, as Nightmare returns to Equestria to bring about Eternal Night.

Twilight Sparkle, protege of Princess Celestia, struggles against the tyranny of this ancient foe. But how will she be able to save herself and her friends when the truth of this ancient legend crashes down upon her? Twilight will have to confront herself...and her heritage.

Polaris501

The Dragonborn, a legendary warrior capable of absorbing a slain Dragon's soul, and knowledge, directly, forever killing it. The Last Dragonborn had defeated the first, stopped the plans of a Vampire cult, and built his own lakeside home, before finally slaying Alduin the World Eater and fulfilling his fate. Now, after all the challenges he has faced, the Dragonborn is sent to a realm where Friendship is Magic, and there is no mead. Finally, to cap things off, he kind of... well...
Became a Dragon.

A close encounter with a category three Kaiju leaves Midsummer Night, a Mark-II Jaeger, in the inky depths of an unknown ocean. With no communications or navigation available, the pilots, Shane and Michael O'Connell, are well and truly out of their element.

Good thing they accidentally brought something with them to liven up the party,

Pacific Rim crossover

Art by: Zeiram0034.
Edited by: Pixel brony.

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In the far reaches of Canterlot Castle, high above in the towers lived the archmage. Everypony knew her, yet few had met her.

Twilight Sparkle sighed, having teleported away another noble seeking favors before reaching the top of the stairs for the second time today. They never learned. As the archmage, she already dealt with political squabbles far too often without inviting them into her home. Aside from personal favors for Celestia, she did what was required of her position and then returned to seclusion and research.

The nobility grumbled that no archmage should be a commoner, and Twilight’s disrespect toward them proved it. Each and every time they were forced to bow to her, they hated what they saw: the position, the status, the deference.

Was she not powerful? Was she not great?

Twilight, now reading through dusty scrolls and long forgotten tales, wrote in her notes — notes gathering dust of their own. A brief thought flashed through her mind.

Am I not powerful? Am I not great?

And then Twilight picked up The Tale of the Royal Pony Sisters.

Defunct side stories told in Across the Boundary. They can still provide a little context, but when in doubt, the main story here is canon.

Cover art provided by Lafiir