This story is a sequel to Twilight Gets a Puppy, Season 5

Now that the time travel shenanigans are finally over... maybe. Twilight, Rahs, and Spike can get on with their day to day and break in their new roomies properly, while keeping Starlight and Tempest from killing each other.
Or keep everyone from making bets about it.

Still this years not going to be any less annoying, with newborns, changes in dragon lord leadership, cutie mark crusades, Pinkie Pie being Pinkie Pie, Discord, of course, Fluttershy's brother, the battle for Rahs heating up between the six, Ogres and Oubliettes games gone mad, a massive prank war, the return of Daring Doo, added on top of the prophecy not having happened yet, and the Sparkles will again find themselves in the middle of everything.

As usual the lewd warning goes here cause of some situations and Cadence. I don't want to use the sex tag cause there isn't any and people might get confused by the current cover art.

Coverart by Marking

The Fire of Friendship has all but faded. One thousand years ago, Equestria fractured... those who disagreed with Celestia's rule left under the leadership of Princess Luna to found their own nation, their own way of life. Seventy years later, Celestia and Luna both disappeared during the first war, leaving the battered nations leaderless in their absence.

Over the last nine hundred years wars have frequently waged between Equestria and Lunaria, each seeking to unite ponykind under their own ideals. Equestria's mastery of magic often gave it the edge in battle, but never enough for a decisive victory. Peace reigns for now, but recent developments in Lunaria signal a shift in the balance between the two divided nations...

On a dark night filled with even darker magics, an insane cult attempts to give Nightmare Moon a body and life of her own, utterly separate from Princess Luna. But, when the spell is interrupted by Celestia, something unexpected is created.

Now, a little black alicorn filly named Nyx finds herself living under the care of Twilight Sparkle, only to be haunted by memories and emotions from her past. Is she Nightmare Moon reborn or is she simply a doppelganger with a soul and mind of her own? Can Twilight Sparkle protect Nyx from those who refuse to see past her dragon eyes and black coat?

Or, will Nyx be forced to inherit the sins that may not even be hers and become the greatest evil Equestria has ever known?

A changeling who has lived at the side of an Equestrian mare for most of his life finds himself in the middle of the changeling invasion of Canterlot. He has no idea who the invading queen or hive are, and just wants to stay where he is, and more importantly, who he is.

The spell that ends the invasion doesn't discriminate, though. With his old pony form irreversibly stripped away, and the whole kingdom out to hunt his kind, he tries to keep his family together, and struggles to find his place in the world.

Please comment! Even now, I'd love to hear what people think as they read through

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Czech version:
Flitter on Google Docs translated by Draim (published at bronies.cz)

Russian version:
Флиттер on ponyfiction.org translated by repitter.
Audio book on YouTube by Diogenus.

Spanish version:
Flitter on DeviantArt, translated by SPANIARD KIWI.

Eighty years after the events of The Dread Chitin, Equestria is a radically different place. The arcane science of the late Duran Thirk and the information found on the Star League library core have combined to catapult the nation's science ahead by hundreds of years.

Now, facing the possible aggression of a completely unknown alien power, Twilight Sparkle and her friends have to gather together once more, leading a crew of the best ponies they could assemble in a voyage outside their own star system. They seek to learn about their potential foe, to explore the galaxy around them, and possibly find allies and friends to stand alongside them. Who knows what they will actually find?

Stranded on a hostile, alien world, Twilight Sparkle and Rainbow Dash must depend on one another and a fellow alien castaway if they want to return home to Equestria.(originally published on FFN)

A damaged robot pony, unlike anything ever seen in pre-industrial Equestria, is found in the orchard. Before it collapses, it says only two words: "Twilight Sparkle..."

Twilight fixes the mechanical mare and gives her a new directive: "Make friends." Now a robot must learn what it takes to be a good friend and, while she's at it, what it means to live...

Featured on Equestria Daily (11/22/15) and The Goodfic Bin! (3/20/16)!
Featuring illustrations by Colby Green (Illustration Gallery found HERE.)
Editors: GaPJaxie,The Knight Templar, GenerousGhibli, E3gner, and Reese.
Technical Consultants: Artichoke Lust and JFalk.

Now with its own TV Tropes page!

Twilight Sparkle accomplished something incredible, something not even the great Starswirl could manage. But ascension into the ranks of Equestria's princesses is not without its difficulties. Before she can take her place as princess of Friendship, Twilight must travel to the underworld and make a ceremonial offering to Death in exchange for her immortality. Twilight is more than a little surprised to discover the identity of the pony under the hood.

After years living in Ponyville and getting to know her friends, Twilight always assumed they were exactly what they seemed: a group of friendly and ambitious ponies. But as it turns out, the sort of pony who saves Equestria and decodes the ancient mysteries of Starswirl is likely to attract ponies a tad more interesting.

Updates on the 3rd or 4th Friday of every month, then daily until that section is complete.

Editing by Two Bit and Sparktail. Cover by Zutcha.

After the debacle of the Storm King's short-lived invasion and the fall of Canterlot, the former attacker, Fizzlepop Berrytwist (Commander Tempest Shadow), muses that the princesses' ability to fight was sorely lacking. Considering that she pretty much took them all down in seconds.

In order to prevent such an abysmal display in the future she has, through a few contacts around Princess Twilight, recruited the aid of a combat master who should be able to teach four princesses avoid such embarrassments in the future...

...Or kill them trying.

A minor injury leads Apple Bloom to learn that she and the other Crusaders aren't like normal ponies. Not having their marks has always been their common bond, but as the trio uncover their unique nature, it becomes clear that their lives are intertwined on a much deeper level. As they learn the secrets of their shared past, it leads to revelations about their friendship, families, and their long sought after talents. What they discover and accomplish along the way is beyond what anypony would have thought possible.

There is now a sequel! Three Wishes: The Hole In The Sun

And a (more or less) standalone Christmas Special set between this and the sequel. Cinder Claws: The Caribou Legend Of Kol-Klor

Big thanks to totallynotabrony, Dusk Watch, AugieDog, and Piquo Pie for prereading and editing help!