Please do check out the Reading List by Lance Omikron to navigate the Amalgam Universe most clearly

A massive war of titanic forces is taking place in the Kaiju's world. However, when two faction's leaders, the current Godzilla and his 'brother' Xenilla duke it out; humanity unleashes its most devastating weapon. Something beyond comprehension occurred and the boundary that divides worlds, if only for the briefest of moments, was torn to shreds. New forms are taken, new bodies assumed. But old hatreds die hard. But how well can hatreds continue in the world of love and tolerance? Especially with its own demons follow it there?

Godzilla Franchise by Toho Company Ltd.
My Little Pony is owned by Hasbro Studios.
This is a non profit fan-work and I claim no ownership on the IP itself.
Story created by Tarbtano
Co-created and Contributed by Faith-Wolff and Skylark8756

HOLY SHEETZU WE GOT FEATURED! THANKS GUYS!
6/27/2014
Now on TV tropes (Thanks Raidrik, VampyGirl; Lance Omikron, Ultimomant, and ZimFan!)

Kaiju Cast:

Godzilla a.k.a Gojira
Xenilla
Mothra
Anguirus
Rodan
Destroyah

[Character copyright of Toho and Daiei Company, artwork property of Matt Frank]

(for any G-fans, Xenilla is the kaiju you may know as Spacegodzilla. I changed the name because I got quirked about typing it repeatedly and am writing the story so it can at least be understood by just an MLP or just a G-fan; and thought it get very confusing that one character's name was just another character's name with an adjective. Also... don't pretend it's the most imaginative name Toho has every made)

This story is a sequel to The Breaking of the Storm

In the wake of Terra Heart's attack on Ponyville, Princess Celestia leads the Royal Guard against the Cult Solar in an effort to eliminate them once and for all. But, while the cat's away, the mice will play. The Noble Court puts their own plan into action, threatening to throw Canterlot and Equestria into chaos. And behind it all, the mysterious Morning Star continues with his plans, which could spell the end of the world.

This story is a sequel to Cold Days and Warm Hearts

The winter passes into spring, bringing with it many changes, both for good and for ill. Dawn Lightwing must contend with the pending disaster as a powerful adversary approaches with designs to end his life. Rainbow Dash finally leaves to join the Wonderbolts, but finds her dreams jeopardized by somepony from the past. Meanwhile, Twilight Sparkle and those close to her are drawn further into the machinations of the Noble Court.

Oh...and somepony is planning to destroy the world...probably...maybe...let me get back to you on that...

This story is a sequel to Dark Matter

The final story of the Savage Skies series.

The world has been saved and the years have passed. But for Dawn Lightwing, not every challenge is behind him. He finds himself faced with something possibly even more difficult than a murderous cult or a mad scientist performing a world-ending experiment, finding what it is that he truly wishes to do with his life. Both Dawn and Scootaloo will go through experiences that challenge their desires for the future and their relationship with each other as they navigate along the final stretch of the convoluted path to adulthood.

This story is a sequel to Rescue on Diamond Mountain

Story seven of the Savage Skies series. The first months of Dawn's stay in Ponyville have been tumultuous, to say the least. Fortunately, winter is coming, not only offering the colt respite from his enemies, but also giving Dawn the opportunity to enjoy the season with his new friends and family. Little does he know that this is to be a season of many firsts for him.

Meanwhile, a new pony has come to Ponyville in response to Twilight Sparkle's call for research subjects. Unfortunately, this stallion's past experiences have left him bitter and paranoid. It will be up to Rarity, of all ponies, to make this unexpected guest feel welcome in Ponyville and heal the wounds in his heart.

This story is a sequel to The Three Sisters: Extended Family

A story of The Three Sisters Universe

Families are like fudge — mostly sweet with a few nuts. ~ Unknown Author

Chrysalis' daughters are serving their community service in Ponyville. Nothing can go wrong. Right?

Unless they all have their own agenda, and surprises keep piling up, complicating matters further. But anything to broker peace between the Changeling Nation and Equestria... right?

Art by the incomparable Conicer!

Now with a TV Tropes page! Warning: Will Contain spoilers.

The princesses gave their magic to Twilight to prevent Tirek from stealing it. As a result, they end up stuck in Tartarus.

Marvelous place, Tartarus. Really brings ponies together. The fact that things manage to go downhill here says a lot about the wonders of family and alicornhood.

Spanish translation by SPANIARD KIWI

Audio Drama by Espa_Roba_5 and Ajvasquezbrony28
Live reading by The Living Library
Live reading by Astro-Brony

Proofread by Octavia Harmony

Only a few weeks have passed since the failed Changeling invasion and their following banishment from Equestria. Celestia, wishing nothing but peace across the entire continent, seeks out Chrysalis in her hive in an effort to sway her, to show her that there are other ways. She knows that convincing Queen Chrysalis that there are other ways than her own will be a difficult ordeal, but she has vowed to try regardless.

An idea that popped up yesterday night... Hope you like it!

This story is a sequel to Seasons Turning

Story 6 in the Savage Skies series.

Thanks to Twilight Sparkle's plan, Dawn Lightwing's story has been spread across Equestria. Back in Ponyville, Dawn and those close to him prepare for the inevitable fallout. However, their plan has some unexpected consequences, leading to Dawn's place in Ponyville coming under threat in the most unexpected of ways as Fluttershy must prove her fitness to be Dawn's mother.

However, there is something more at work behind the scenes. In order to protect his home and his place in Ponyville, Dawn must venture abroad with an unexpected and unwanted ally in order to bring an end to these machinations.

The series begins in Foal of the Forest.
Now with a TV Tropes page.

Princess Twilight Sparkle has done something unheard of: she's found a changeling right outside Canterlot borders! But much to his surprise, Twilight doesn't kill him or turn him in as the law requires. Instead, she saves his life.
And when life gives you lemons, you will feed.

*Featured 5/19/14—5/21/14! Thank you so much, guys! I love you all! *Proof*
Set before "Twilight's Kingdom". Twilight has been princess approximately six months. Not sure if AU tag is necessary.

My Amazing Helpers!:
spideremblembrony
SirRage
Polaris
Ariin
PoisonedArrow
Go kill them with your love!