Apple Bloom is lost. She's trapped within a labyrinth of corridors and has been forced into the form of a strange, unfamiliar creature. However, she isn't alone in her infinite prison. Something evil is slowly starting to join her. Apple Bloom's sole chance for getting back home lies in the hands of a mysterious guide, her friends, a doomed couple, and...the Doctor.

This story is a sequel to Doctor Whooves Episode 18: The Mystery of Colgate

Colgate crosses paths with Clockwork and Bright Eyes following her arrival in the tourist-centered, mysterious country of Elmheim. Upon crossing paths with Matilda and a universally-displaced Daring Do, the group sets out into the jungle to discover the hotspot for dimensional rifts in the Equestrian universe. But their trip to the rift epicenter will be far from simple.

This story is a sequel to Doctor Whooves Episode 17: Angie the Great

Upon returning to Ponyville, the Doctor learns that there's a new mare in town by the name of Colgate and that she desperately needs his help. When a chance encounter leads to Twilight and Pinkie Pie getting trapped in the past, the Doctor will have to solve the mystery behind Colgate's curse as well as learn her connection to an ancient and lonely creature.

This story is a sequel to The Doctor Whooves Chronicles Episode 4: Under the Sea

After attending a crazy wedding, Derpy asks the Doctor to take her somewhere relaxing. However, their plans are changed when a unicorn by the name of Twilight Sparkle stumbles into the TARDIS and the TARDIS takes them to a war-torn planet over 600 years in the future. Things only get worse when the three travelers are taken prisoner, but this is only just the beginning.

This story is a sequel to The Doctor Whooves Chronicles Episode 3: The Monster in the Mirror

For their first willing trip together, the Doctor and Derpy find themselves in the underwater metropolis of Atlantis. However, the saltwater utopia is burdened by terrorists who wish to keep Atlantis separated from the overworld. With the Prince of Equestria visiting and the life of the King of Atlantis threatened, the watery city is about to reach its boiling point.

When the possible collides with the impossible, a bond is created; and nothing walks away unchanged.

This story is a sequel to Doctor Whooves Episode 16: A Country at War

The Equestrian and changeling armies have suffered greatly from the battle. Esmeralda is ready to end the war once and for all and sets her sights on the last safe haven in Equestria: Canterlot. As Donna ventures into the Changeling Castle to find Esmeralda's greatest weakness; the Doctor, Twilight, and Angie take charge and Angie goes beyond what she ever expected of herself.

This story is a sequel to Doctor Whooves Episode 15: The Christmas Ponies

The Doctor, Twilight, and Derpy decide to take Donna to Equestria. However, they accidentally end up in the year 56, where Equestria is currently caught in a bloody war with the newly-founded Changeling Empire. When Derpy and Donna are taken captive, the Doctor and Twilight must team up with a hardened Celestia and a simple farmmare in order to stop the merciless Queen Esmeralda.

Twilight Sparkle has lived a full life but now she's a 115-year-old pony lying on her deathbed and waiting to pass on. As her time draws near, she receives a visit from a mysterious mare who has come to seek out the answer to a simple curiosity.

This story is a sequel to The Doctor Whooves Chronicles Episode 2: Queen of the Moon

The Doctor returns Derpy to her time but their parting is put on hold with a surprise appearance by Carrot Top and two of her friends as well as the arrival a mysterious spaceship that crashes in a forest on the outskirts of Ponyville. However, something sinister resides in the ship and it has its eyes set on one target: Derpy Hooves.