On the 996th anniversary of Nightmare Moon's banishment, Princess Celestia plucks a quartet of strange entities from the night sky. With her fifteen-year-old student, a rising Royal Guard officer named Shining Armor, a young Princess Cadence with an unrequited crush only the subject and his sister are oblivious to, and a small team of Royal Guards, she investigates. Their discovery is breathtaking to the ponies. What happens after ensnares the small US Special Operations Command task force led by Captain Scott Mitchell of the Ghosts, who through fate or misfortune found themselves on another world.

The events that occur over the next few months threaten to change Equis forever, as a series of low-profile conflicts that have long remained outside Equestrian borders begins to encroach upon it. As things are, lies, treachery and secrets are what is keeping Equis from tearing itself apart, and at the same time are the very things that may destroy it.

But if Captain Mitchell's team and the accompanying Special Forces can complete their new mission against all odds, then Equestria and the rest of Equis will never know what really transpired, or the true driving forces behind the long-hidden conflict. Because they're Ghosts, and they were never there...

Note: Uses characters and appearances from console versions of Ghost Recon Advanced Warfighter 2.

DISCLAIMER: Not inspired or influenced in any way by Titanomachy. The author has never read that story, only seen it featured and guessed its content based on the title and description. Any similarities are purely coincidental, though Greek mythology is a significant literary inspiration.

This story is a sequel to Doctor Whooves Episode 18: The Mystery of Colgate

Colgate crosses paths with Clockwork and Bright Eyes following her arrival in the tourist-centered, mysterious country of Elmheim. Upon crossing paths with Matilda and a universally-displaced Daring Do, the group sets out into the jungle to discover the hotspot for dimensional rifts in the Equestrian universe. But their trip to the rift epicenter will be far from simple.

Derpy Hooves has always been, well, Derpy. But what if one day, that wasn't the case? Twilight's been experimenting with a new type of spell that she thinks can endow a pony with the entire wealth of knowledge collected in her library and she tries to use it on herself... but it misfires and instead the spell collides with an innocent muffin. But who on Equestria would eat a glowing, obviously jinxed muffin?

Twilight Sparkle is called upon to negotiate trade arrangements with the griffons. Of course, all her friends join her for what should be a casual pleasure cruise in the airship Canvas Streak. After all, this is her first REAL test as a princess, and why shouldn't they support her?

Late one night, though, Applejack feels restless and goes up on deck to watch the stars. She considers her life. She considers her family. She considers her friends. She considers the freak storm approaching from the south.

In retrospect, it might have been better to let the crew handle that and head back below deck.

Now alone on a small island, Applejack must survive and wait for her friends to come pick her up... even though the freak storm is blocking them off. Surviving's easy. Waiting's easy too! She can do this.

....she can do this....

Image by WhiteDiamondsLtd.

Both Link and Epona race to fight evil once again, however once they make it to the thing that is behind all the monsters that roam Hyrule, they get a big surprise. Once again, Equestria is threatened by evil and Link is once again called to the line of duty. Isn't he?
~~~
[NOTES]
I will add tags as I go along.
Cover image was made by Aeroflyte on DeviantArt, which can be found here, go check him out.
Now edited by these people: m2pt5 and Crescent Quills!
Based off of the Ocarina of Time timeline (which includes Majora's Mask), but takes a few aspects from Twilight Princess.
~~~

Ever since moving to Ponyville, Twilight has neglected something: her other residence. The rooms she used in the Canterlot Archives are still filled with her possessions. It's been nearly a year, and the Archives want her to clear out already so the place can go to the new departmental librarian. She has until sunset -- or anything still there just might remain so. Spike, knowing the deadline is hours away from arriving, recruits the Bearers to help her.

But Twilight doesn't want help.

A deadline is in front of her, and she's -- stalling.

They have until sunset...

(Part of the Triptych Continuum, which has its own TVTropes page and FIMFiction group. New members and trope edits welcome.)

Now with author Patreon and Ko-Fi pages.

This story is a sequel to Doctor Whooves Episode 17: Angie the Great

Upon returning to Ponyville, the Doctor learns that there's a new mare in town by the name of Colgate and that she desperately needs his help. When a chance encounter leads to Twilight and Pinkie Pie getting trapped in the past, the Doctor will have to solve the mystery behind Colgate's curse as well as learn her connection to an ancient and lonely creature.

A brother and sister flee their homeland. Desperate to escape the Madness, they run to neighboring Equestria. Where they hope to ride out the storm in peaceful Ponyville.

It's a shame their past will stop at nothing to find them again.
Editing by Phlamingsoul
Cover art by butterkeet

51 Pegasi b is an extra-solar planet believed to be capable of supporting life. EAD Celestia 1 is a ship designed to transport thousands of ponies across the interstellar distance. Seven months into the flight, something goes awry. Cloud Flare has only one real goal, survival, but he won't give up on his friends that easily...

Commander Shepard remembers firing the crucible. She remembers she had to make an important choice. She remembers good friends, a lover, and plenty of loyal crewmen.

She just can't remember what her choice was. What the threat she was striving so hard to end was. Or what the faces of the most important people in her life look like.

She also has no idea how she wound up in the monster filled forest she's come to call home for the past eight months. Or how she picked up a snarky A.I. making its home in her omni-tool.