Twilight reads about a way to view a pony's soul, to see everything about them laid bare. When she tries it on her friends, will she be able to look at them the same way again? Or will the secrets hidden in their hearts drive her away?

(Yes, I borrowed the idea of a "soulgaze" from The Dresden Files, because it's something that really fascinates me. It's not a crossover, just an idea.)

Now has a sequel!

Princess Luna is back! Purified by the elements, restored to her proper self, and reunited with her sister, the younger alicorn tries to stabilize herself in an Equestria that is not how it once was.

This is a collection of stories.

Back in the Royal Saddle: Luna's first act as returning Princess is to choose the two lucky stallions who will act as her personal guard.

A Week With a Loon: Luna takes over control of Canterlot, so that her dear sister may take a vacation.

Balanced: Luna takes on young Twilight Sparkle as her student.

Of Night Light's and Sound Waves: Luna is "persuaded" to go out at night and explore Canterlot.

The Cutie Mark Crusaders have always lived in the now, getting what they think needs to be done as a soon as possible, executing their plans just so they can move on to the next one right away, not thinking about the consequences till they’re right there in their faces. But when an attempt to earn their cutie marks goes too far, Sweetie Belle and her friends must face a horrible reality that sends their world into darkness and fear. How will the truth be uncovered and what will be sacrificed to undo this nightmare?

It is the year 2038, and the Earth is slowly being consumed by a space-borne monstrosity dubbed the Black Tide, which is using nanotechnology to remake the planet into something hideously alien.

Erin Olsen works for Project Harmonics, humanity's last-ditch effort to find a new world before the Tide can wipe them out. But when that world is found, and it turns out to be occupied, Erin will need to find the courage to face the unknown in order to save the inhabitants of both worlds.

(Many thanks to Easteu for the fantastic cover image for this story!)

Now with its own TV Tropes page

There is now a follow-up to this story: Sunflower - Side Projects
Sequel: Project Sunflower: Harmony

The star system Omega Centauri was just another oddity on a map to scientists in the not too distant future. However when they found the star was orbiting an earth-sized, earth-like planet instead of a black hole as its motion had suggested, a mission was scrambled to investigate this most unusual of celestial behaviors.

Hamstrung by politics, and nearly crippled before it began, the 'Lone Ranger' mission was reduced to just one crew member and left to his own devices.

These are the logs of Arrow 18 and its lone commander. This information is classified TOP SECRET by the Global Space Agency.

Do NOT tell the princess.