This story is a sequel to Change

There are many changeling hives spread throughout a large portion of the world. Wherever love energy is going to be found the changelings will pursue it.

But now, one by one, they are disappearing.

Many hives located at the very outer edges of changeling inhabited lands are vanishing without a trace, Twilight Sparkle's family history has returned to haunt them all as something is hunting the changelings down. But how? And for what purpose? And more importantly, what does this mean for Queen Twilight Sparkle and the rest of the changeling race?

Edited by RC2101_Copey.
Cover Art was designed by Jesuka.
TVtropes Page: http://tvtropes.org/pmwiki/pmwiki.php/Fanfic/ChangeQueenOfTheHive
Physical copy: https://www.fimfiction.net/blog/806366/change-queen-of-the-hive-physical-copy

(Featured on the first day, 6/11/2016. Awesome!)

This story is a sequel to Princess Celestia: The Changeling Queen

This story is a direct sequel to Princess Celestia: The Changeling Queen. Reading that first is necessary to understand any part of this story.

Co-authored by vren55 and Zervziel

Alternia, sister to Chrysalis, ruled Equestria for a thousand years, disguised as Princess Celestia, while the alicorn slumbered in a healing sleep. Now revealed, Alternia prepares to become Equestria’s first changeling princess, and prove herself to the ponies she loves at the side of her co-rulers Luna and the newly-returned Celestia.

But even as the crown descends onto Alternia’s head, something is stirring in the depths of the Eastern Sea, something that will turn the surface world onto its head. Some power that could destroy Alternia, and all that she loves, before she can even regain the approval of her own ponies.

Will Alternia restore the trust her ponies once placed with her? Will she found a hive? Will she find love?

All that is certain is that Equestria, and the world, will never be the same again.

Now with a TV Tropes page.

Empress Tethys and the Kelpies Created by Zervziel

That Fantastic Cover art is by Plainoasis

Pre-read and edited by:
Blankscape,
FinalFan,
Courage Fire
Cosmic Cowboy

This story is a prequel to Seven Days in Sunny June, Book II

It's been nine years since Raspberry Beryl fled her hometown and the ponies who had her pegged as a monster. Nine years since she killed her abusive father in a blind panic. Nine years since she discovered the truth about her dark ancestry. A lot has changed in her life since that fateful day. She found friendship in Ponyville, helped save the world from a dark curse, and claimed her title as head of House Sombra, and Princess in pretense of the Crystal Empire.

Now, Raspberry Beryl finds herself returning to her hometown along with Princess Twilight Sparkle to make peace with her past. But something is wrong in Lonesome Dove. Strange events begin to unfold, ponies start disappearing without a trace, and Raspberry is suspect number one. To prove her innocence, Raspberry must get to the bottom of the dark events while facing the shadows of her past.

Welcome home, Raspberry Beryl.

A joint project with Shinzakura and BlueBastard

Everything changes for Twilight Sparkle and her friends when a mysterious extraterrestrial ship crash lands in Equestria. When Twilight messes around in the ship's systems with her magic, she ends up transported to an alien world unlike anything she imagined: a box canyon in the middle of nowhere.

To get home, Twilight must enlist the help of the eccentric Red and Blue soldiers that live there... if she can get them to stop bickering first! Additionally, she finds herself being pursued by the enigmatic military agency known only as Project Freelancer. Back in Equestria, all is not well for Twilight's friends as forces involved with the crashed ship make themselves known. Reds, Blues and ponies will all have to work together to discover the mysterious connection between Equestria and Project Freelancer.

A crossover with Red vs Blue. Written with the intention for the story to be followable without having watched the series. (just don't expect to get all the references).

Now with editors! BradtheBrony and Rough_Draft.

I made a blog post explaining things. You should read it.

TvTropes Page.

This story is a sequel to Reunited

Six years.

For six years she has slept in a coma and now she has awakened. The entire world wants her to die for her crimes. Equestria wants her to die for her lies. Even I will admit I just want to see her die so I can move on with my life.

But before I say goodbye to my mentor, the former Princess Celestia, I have to ask her one question.

Why? Why did she do all this? Why transport us from Equestria to Earth? Why try to turn Humanity into Ponies?

All I want is the truth.

Based on The Conversion Bureau series.

Pre-Read by bahatumay, Socks (Also thanks for finding this cover art), and Chaotic Note

Edited by Biker_Dash

Please Help Out The NegotiationsVerse TV Tropes Page

This story is a sequel to Truth

This is the end.

I've lost everything. My home. My family. My friends. My pride.

Equestria. My Equestria is gone. The humans have won and have come to finish me and the others of the Freedom Fighters off. I'm going to die, but I'm not afraid.

I've been dead for a long time.

Based on The Conversion Bureau series.

Pre-read and edited by: Socks, Chaotic Note, and Biker Dash

Please Help Out The NegotiationsVerse TV Tropes Page

This story is a sequel to The Celestia Code

When the monsters created by the dark crystal engine escape their prison, it's up to Princess Twilight Sparkle to deal with them. She gets help and advice from Princess Luna, but things don't go as planned. In fact, when a pony who relies on logic and rationality tries to navigate the stormy seas of emotional entanglement while simultaneously saving Equestria from a horde of evil creatures intent on destroying everything they encounter, nothing goes as planned.
AUDIOBOOK by VisualPony
WARNING: Major spoilers in the comments.

Book 2 of the Alicorn Adventure series.

Goodreads Page
100% Approved by Twilight's Library!

The Badass Twilight tag applies more than ever, but please note the new tags.

This story is a fairly direct continuation of The Celestia Code. You might be able to follow it without having read The Celestia Code first, but it's better if you do.

The sequel is here: The Twilight Enigma

Most excellent pre-reading/editing done by the erudite AcademicPony and the dapper statoose!

Sometimes all a pony wants is a second chance, another chance to redeem themselves or make up for something that they did wrong. To make it right. But the world isn't always willing to give them another chance and instead will hold them to what they did in the past instead of what they do in the present. Sometimes the world won't let go of what you used to be instead of who you are. Sometimes, it see's you as a monster.

Sequel to a Dark Knight for Equestria and sister story to It runs in the Family.

Bon Bon's voice is funny, and that's about all that anypony who meets her notices, as her marefriend Lyra soon steals the spotlight with her explosive personality, strange obsessions, and curious beliefs. And why not? Bon Bon is, after all, a perfectly ordinary, boring pony in every way but two: her voice, and the carefully kept secret that she isn't really a pony.

(Edit:) Now with an annotated version, courtesy of the incomparable Shoggoth Lord!

This story is a sequel to Oskar Osäker: Your Worst Enemy

[Prototype 2] X MLP:FiM crossover

Emerald Gleaner once thought the NYZ would remain in her memories and nightmares. But with the appearance of one Sunset Shimmer this terror of the past is brought back to the forefront as Emerald and loved ones dive unknowingly back into the darkness of Blackwatch's heritage.... and there is no running from your past when it is screaming it's fury in your face

A big thank you to More Dakka for the Coverart, Nightmare Knight for editing
(Fimfiction likes to chew up coverart when it's big, if you want to see how it's supposed to look, take a look at my user page.)