**This story is very old and not very good. It has since been cancled.**
Twilight Sparkle has been captured by an alien race that is set on controlling the universe.
Her captors are set on collecting the powers of her, and the hundreds of other captured aliens. If they succeed, Equestria and the whole universe will become slaves of these creatures.
However, there is a war being fought against them, a war that the "good guys" are quickly losing. That is until a miracle falls into their lap.
This story is heavily inspired by Knight Breeze's story; The Nautilus Protocol.