While my guess about her abilities was correct, my theory about her reaction couldn't have been more wrong. It seems Madara now has control over the most unstable member of the Mane 6. I'm currently resisting making an overused joke. Actually, why should I resist? The more obvious the joke, the more it has to be addressed. Do you think those experiments will include baking from now on?
I do have one small issue that won't quit bugging me. Wouldn't the powers you gave Pinkie in the side story make her immune to blunt force? If so, that would make Minute Maid's attempt at opening her eyes that way useless. I'm not saying that the scene needs to be changed, but I just thought I should bring the point up.
It looks like this story is taking a turn into darker waters (though I'm not sure how that's possible when the first story in the series included that brutal death scene with Angel.) The inevitable fight scene between Pinkie and the others looks like it will be a good one. I look forward to the next update.

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I would think her skull wouldn't be made of rubber, there for her head would be severely damaged. Actually I didn't think of that.