It was just supposed to be a routine archaeological mission. Twilight was looking forward to exploring the ancient temple and heading back home to Ponyville and her friends as soon as possible. But, soon ponies start disappearing, and statues never seem to be in the same places. Through the gloom and the darkness Twilight is forced to fight for her life, with only the hidden recordings of a mysterious stallion to guide her.

Source for Police Box image: http://www.crazystickercollection.com/wp-content/uploads/2014/11/doctor-who-tv-series.jpg

After botching a spell, local Ponyville librarian Twilight Sparkle accidentally opens up a rift in time and space right above her house. It goes unnoticed to most ponies, but the members of Torchwood are not normal ponies.

Her first encounter with aliens brings her to Jack who reluctantly let's her join Torchwood.

But all the glamor and adventure she had imagined may not be worth the price...

(This story started as a joke between my friend and I about how everyone was gay for Spitfire, and everyone was also gay for Captain Jack, and how a Cpt. Jack/Spitfire ship would be the gayest straight ship ever. But it ended up being more than that. I hope you enjoy it!)

This is a Doctor Who crossover (as if that wasn't already obvious), so if you don't like Doctor Who, why are you here?

This story ignores all canon past The Return of Harmony.

For years, the Time Lord known only as "The Doctor" has traversed throughout time and space, helping numerous beings out in the process. He's saved entire planets. He's defeated entire armies. But now comes the biggest challenge of all.

He has to travel with a pony of all things. Well, in any event, it's better than a Dalek or a Cyberman!

While traveling Captain Jack Harkness and The Doctor are transported to Equestria.
((Yooo. Visit my profile for details on this story's status, mmkay?))

Crossover with Doctor Who/Torchwood
Jack Harkness, ex-time agent, ex-con man, ex-companion, current leader of the Torchwood institute. Jack Harkness, man of the 51st century stuck in the 21st, pledged to protect the earth from extraterrestrial and 'supernatural' threats. He fought every enemy imaginable, and some that defy imagination. Faced by his greatest opponent, he called upon the Doctor to save the human race... and ends up in Equestria.
Oh, did I mention he doesn't stay dead?

After losing a good friend who will no longer remember him, an incident in the TARDIS causes the Doctor to get stranded in a parallel universe. Instead of just another parallel earth however, he finds himself in the world of Equestria where ponies rule. While the Doctor tries to get his head around the concept of magic, and Twilight sparkle tries to understand the TARDIS, a disaster occurs when the Doctor inadvertently reveals a terrible secret, and an old foe from the Doctor's past will try to take over Equestria. The Doctor and his knew found allies our the only ones who can save the day.

[Tales of the Carnageverse]

In Equestria's early history, years before Luna had become a princess like her sister, ever before she gotten her cutie mark, she was once plagued with nightmares. She wanted to sleep without these monsters and demons to haunt her. Help does come in a blue box, from a stallion who calls himself "Doctor", with is assistance, and a pony whom everyone thought was Luna's imaginary friend.

Author's note: I do not own any rights to "Doctor Whooves and Assistant" by the fantastic YouTube radio drama series by Ponies with Pockets Productions aka PrierceSmoulder. This story is a tribute to their series that get's better and better with every video.

Also, a huge thank you to SecretBrony01 for editing this.

On the day before her 800th year of her lonely reign without her younger sister, Celestia takes the day before to mourn over her sister ever since she was banished to the moon. But on this particular day of grief, she gets a visit from the Doctor, along with somepony whom she hasn't seen in a very, very long time, her sister Luna.

Any kind of constructive criticism is welcomed. (The key word here is "constructive".)

A special thank you to SecretBrony01 for proofreading this story.

Most ponies, when they see a pony with an hourglass cutie mark, would figure that it would mean their talent has something to do with time, or clocks, or another harmless meaning. Technically, the first is true, but there is a hidden meaning beneath it. To those that carry it, they know that the hourglass marks them as refugees, survivors from a war that would make any normal pony go mad from glimpsing just a fraction of the sheer scope of it. These unusual ponies have all found asylum in Equestria, but now, one last escapee will be followed by an evil that will threaten to ignite the conflict anew and bring down their last refuge with it.

But this newcomer not only brings the remains of the conflict with him, but is their best and only hope of ending it once and for all.

The last gasp of the Time War has come to Equestria. The Doctor will find old friends, make new ones...and face off with one of his greatest foes, one last time.

One from a city with an unfamiliar name,
One with a prismatic mane,
One who's curiosity
Will this day be the master key.
The next one stands out from the rest,
With masculinity he is blessed.
Next we have the audacious mare,
who insists that she will never be scared.
The last companion, who will give way,
Will be found cooking a souffle.
With these six ponies you must flee,
If you want to restore your history.

Six less-than-extraordinary ponies, one crazy stallion, one monster beyond belief, and eight hours to stop it all.
Sounds like a job for Doctor Whooves.

EDIT: Added character 'titles' for each chapter. These will let you know who is telling a particular chapter.