A lone clone trooper finds himself waking up within the dark confined transportation bay of an L.A.A.T. he'd been riding on. He learns quickly that he's apparently the only surviver of a harsh crash landing, leaving the ship in heavy disrepair.

With nothing to gain by simply sitting there, the clone ventures out in an attempt to find civilization and hopefully make his way back to the Grand Republic, and the galaxy-wide war. However, he soon realizes that this task isn't gonna be an easy one, and this planet seems to host quite a few oddities and mysteries. From its population of colorful ponies, griffins, dragons, and tons more creatures, to its primitive technology and mystical ways of life.

But another factor is quick to present itself, for this entire planet and its inhabitants are blissfully unaware of the blazing war that's raging just beyond their skies. A war that could come raining down on them and destroy their peace in seconds...

Featured: 6/29/19, 7/5/19, and 7/19/19! Thank you all so much!

While pursuing a splinter of Hive Fleet Behemoth, Captain Sicarius and the Ultramarines 2nd company are caught in a warp storm that carries them and their prey to an unknown planet. Meanwhile, Princess Luna notices something strange in space that could spell danger for all of Equestria. Swept up in a war between the terrifying Tyranid swarm and the vengeful Ultramarines, the ponies must fight for their lives in a war that spans a galaxy.

Thanks to thirdstring_overlord and GiftedMonster for proofreading my newer chapters. thirdstring_overlord also writes an excellent 40k crossover that needs some fans. Go check it out!

Disclaimer: I do not own My Little Pony: Friendship is Magic and Warhammer 40k. They are the properties of their respective owners.

This story is a sequel to Iron Hearts: Book 4 - Emerald Dawn

An MLP/Warhammer 40K crossover, part 5.

With their plan established and put into motion, the 38th Company begins the long and unwieldy task of planetary defense, fueling the arcane energies that may yet unsteady the Empyrean and spare their fleet from an enemy without number or mercy. The inhabitants of Centaur III and even the abandoned aggressors help where they are able, but as their foes grow in number and destruction spreads across the planet, the war for the Centaur system has become a bloody race against time.
All the while, the grim culture of the Chaos marauders continues to mingle with the enlightened benevolence of their equine allies. Tempers fray and allegiances blur. But the die has been cast: Equestria and the Company will survive together, or be snuffed out together.
And even should they succeed, what future awaits these unlikeliest of friends?
For there is no peace among the stars. Only an eternity of carnage and slaughter, and the laughter of thirsting gods.

ALL THE EXPLOSIONS. JUST, ALL OF THEM.

(Cover art by Ahrimatt)
(This series now has its own TVtropes page!)
(This series is a contestant in the Tournament of Canterlot, a charity event to raise money for Syrian refugees! Go here for details and donations!)

This story is a sequel to Iron Hearts: Book 1 - Planetfall

An MLP/Warhammer 40K Crossover, part 2.

Celestia has handed down her order. The Iron Warriors must be defeated and driven from the planet, lest the corrosive grip of Chaos infect their world. With great reluctance, Twilight and Company depart for the Iron Warriors fortress-factory in order to confront the Chaos Warsmith. However, in this mission it is not the might of the enemy that will be their greatest challenge, but their own burgeoning friendships with the admittedly less-than-saintly members of the 38th Company.
At least until the Iron Warriors actually consider them a threat. Then it's totally their military might that will prove to be their greatest challenge.
All the while, the Tau forces lick their wounds and plot their next move. They are far from defeated, and the Iron Warriors have little inkling as to the aliens' true purpose.

MORE EXPLOSIONS!!

(Dark humor warning; minor grimdark)
(Cover art by Nicholas Kay)
(This series now has its own TVtropes page!)
(This series is a contestant in the Tournament of Canterlot, a charity event to raise money for Syrian refugees! Go here for details and donations!)

An MLP/Warhammer 40K Crossover

The Iron Warriors 38th Company has landed in Equestria, entrenching themselves like a barbed hook. They hunt the aliens of the Tau Empire, intent on destruction and pillage.
A small squad is dispatched on a reconnaissance mission, only to find that there is intelligent life on this world besides the feuding space-farers.
Will these improbably adorable and friendly equine aliens turn the damned warriors of Chaos from their blood-soaked path, cleansing them of their dark legacy with the magic of friendship and harmony?

No.
No, that isn't happening.
EXPLOSIONS!!

(Dark humor warning; limited grimdark themes)
(Cover art by Nicholas Kay)
(This series now has its own TVtropes page!)
(This story is a contestant in the Tournament of Canterlot, a charity event to raise money for Syrian refugees! Go here for details and donations!)
(Featured on Equestria Daily 8/20/15 )

This story is a sequel to Iron Hearts: Book 2 - Ferrous Dominus

An MLP/Warhammer 40K crossover, part 3.

The formal negotiations between Equestria and the Iron Warriors have failed. Yet peace and even cooperation between the harmonious ponies and the corrupted militants blooms in the dark corners of Canterlot and the open streets of Ferrous Dominus. The Elements of Harmony are safe, trade flourishes, and cautious meetings grow into lasting friendships as an unsteady calm descends upon both forces.
Even the Tau threat seems to have mysteriously vanished as the Iron Warriors refuse to assault their hideouts and risk springing the traps of the Fire Caste.
But the Tau have not vanished. The Lamman Sept of the Tau Empire, the Fire Caste's hidden dagger, have come to grips with the slumbering giant looming over their doorstep and have moved forward into the final phases of their plan. Fleets ply the void, hunters stalk the orchards, and in the depths of the badlands a strange device is rapidly assembled for purposes unknown.
The Tau alone know that time is running out, and more than just the fate of Centaur III hangs in the balance.

SIGNIFICANT POSSIBILITY OF EXPLOSIONS.

(Dark humor warning; minor grimdark)
(Cover art by Ahrimatt)
(This series now has its own TVtropes page!)
(This series is a contestant in the Tournament of Canterlot, a charity event to raise money for Syrian refugees! Go here for details and donations!)

This story is a sequel to Iron Hearts: Book 3 - The Sept Lamman

An MLP/Warhammer 40K crossover, part 4.

The Tau threat has passed. The fleet that once thought to sweep aside the tainted pirates of the 38th Company has fled the system. The Lamman Sept is broken, demoralized, leaderless...
... And victorious.

With Lamman's plan put into motion, an alien horde hurtles through the Warp toward the Centaur system, its soldiers without number and thirsting for violence. Equestria's heroes must find a way to stop them, or the entire planet will be overrun with ease and its inhabitants butchered. While they could afford some pretense of neutrality and disinterest in the fight between the Iron Warriors and the Tau, now it is their world that lay in the crosshairs of the foe. Ponykind will need help to survive, and they look to the forces of Chaos for aid. But is there any hope to be found in the darkness?

EXPLOSIONS ARE IMMINENT.

(Dark humor warning; mild grimdark)
(Cover Art by Ahrimatt)
(This series now has its own TVtropes page!)
(This series is a contestant in the Tournament of Canterlot, a charity event to raise money for Syrian refugees! Go here for details and donations!)

Please do check out the Reading List by Lance Omikron to navigate the Amalgam Universe most clearly

A massive war of titanic forces is taking place in the Kaiju's world. However, when two faction's leaders, the current Godzilla and his 'brother' Xenilla duke it out; humanity unleashes its most devastating weapon. Something beyond comprehension occurred and the boundary that divides worlds, if only for the briefest of moments, was torn to shreds. New forms are taken, new bodies assumed. But old hatreds die hard. But how well can hatreds continue in the world of love and tolerance? Especially with its own demons follow it there?

Godzilla Franchise by Toho Company Ltd.
My Little Pony is owned by Hasbro Studios.
This is a non profit fan-work and I claim no ownership on the IP itself.
Story created by Tarbtano
Co-created and Contributed by Faith-Wolff and Skylark8756

HOLY SHEETZU WE GOT FEATURED! THANKS GUYS!
6/27/2014
Now on TV tropes (Thanks Raidrik, VampyGirl; Lance Omikron, Ultimomant, and ZimFan!)

Kaiju Cast:

Godzilla a.k.a Gojira
Xenilla
Mothra
Anguirus
Rodan
Destroyah

[Character copyright of Toho and Daiei Company, artwork property of Matt Frank]

(for any G-fans, Xenilla is the kaiju you may know as Spacegodzilla. I changed the name because I got quirked about typing it repeatedly and am writing the story so it can at least be understood by just an MLP or just a G-fan; and thought it get very confusing that one character's name was just another character's name with an adjective. Also... don't pretend it's the most imaginative name Toho has every made)

This story is a sequel to Wily's Wittle Wub

21XX...

A dark period in the world's history. With the rise of Reploids, society was thought to enter a new golden age...until the rise of the Mavericks. Driven mad by viral infection - or simple greed and rage - these Reploids become a drastic threat to the world peace...and the conflict between them and the Maverick Hunters would tear the world apart.

However, a shining light of hope remains in Dr. Light's final creation...Megaman X. With his adopted pony daughter at his side, he shall-

Wait, what was that last part?
----
Part of the PWNY-verse.

Edit: Now with cover art by sanyo21!