My top favourites

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  Twilight Sparkle: Night Shift Twilight Sparkle: librarian by day, monster hunter by night, and irredeemable cynic all throughout. Vampires? Simple. Zombies? Easy. Pretending not to see them every night? Now that is a challenge... by JawJoe 124,536 words · 1,517 · 66
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  Why am I Pinkie Pie?! Why the heck did I turn into Pinkie Pie?! by Hoopy McGee 53,539 words · 4,200 · 76
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  Hard Reset Twilight gives her life to stop a changeling invasion. Repeatedly. by Eakin 36,358 words · 8,208 · 134
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  Pinkie Personalities Pinkie Pie isn't alone in her head- she has multiple personalities. The three of them have kept this fact secret for a very long time. Now, however, Twilight's overheard them arguing.... by Drebom 45,447 words · 2,389 · 41
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  My Little Villains It was supposed to be a normal day in Ponyville. But, as it is known, there are no normal days in Ponyville. Due to Twilight's failed expirement (another one), Fluttershy has to deal with a problem. Three of them, to be exact. by HiddenUnderACouch 110,248 words · 1,255 · 21