After the events of the Canterlot Wedding, the Changelings regroup and plot a return. Upon their comeback, they successfully imprison every live equine in Equestria into cocoons within the span of a year. Nesting in the mountain next to Canterlot, the Changelings feed off of the thousands of ponies' love, claiming Equestria as their own.

Many years after their triumph, one pony escapes her cocoon prison through sheer luck, discovering Equestria to be a dark and barren wasteland of dead trees and no existing plant-life. Searching for any means of survival that she can find, the individual pony seeks a safe place to hide from the Changelings hot on her tail, knowing that if she gets captured again, they will put her back in her cocoon where she will be trapped for the rest of her life, dooming her kind forever.

After a mysterious and widespread spell causes ponykind to vanish, Fluttershy is left behind to cope with what the future has in store for her and the remains of Equestria.

In a matter of days, the once-prosperous nation begins to descend into a harsh and unforgiving place. While cities crumble around her, Fluttershy finds herself living in a land rife with dangers and heartbreaking reminders. With nopony to turn to, Fluttershy is forced to learn to fend for herself, discover what happened, and, if possible, find a way to reverse it.

Survivor Shy is an illustrated story following Fluttershy in the weeks after a magical cataclysm. While the last pony relives her past, readers are offered a vivid glimpse into Fluttershy's mind and are led on a harrowing journey through the ruins of Equestria and beyond.

Story branches out before Season 3 Finale.

In-progress Reading by Finish Line available
In-progress Russian translation by Papilion_star available.

Between the events of The Return of Harmony and Keep Calm and Flutter On, the daughter of a once-famous Equestrian Alchemist is discovered in the basement of her father's home, still alive and still young. Twilight must unravel the mystery as to what her father was up to, and why he imprisoned his only daughter.