Stories you should give a shot.

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  My Little Caboose: Blue is Magic! What happens when the Reds and Blues finally get Church out of the Epsilon unit? Caboose decides he wants a turn in the unit, of course! What happens next? Well let's just say he always did say he wanted a pony, now he has a world full of them. by DarkWing 343,908 words · 2,853 · 139
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  Harbinger, randomness of George Brother of discord shows up. Turns out he's actually a good guy. Just don't piss him off. by LucidTech 31,476 words · 894 · 30
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  Fallout Equestria: Heroes A Fallout Equestria Sidefiction. A lonely guard, inspired by Littlepip, goes to save her brother. by No One 582,905 words · 2,382 · 71
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  My Little GLaDOS GLaDOS just wants to test and be alone. Why can't any of these crazy ponies understand that? by TheApexSovereign 115,636 words · 3,830 · 117
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  My little Okama : Cross-dressing is Magic When the world's campiest shapeshifter comes to Equestria, weirdness happens. OKAMA WAY! by RaptorJesus 27,754 words · 193 · 8