This story is a sequel to The Princess that Equestria Never Had

Although this fic is listed as a sequel, you won't be missing anything if you read this fic without reading Never Had.

After traveling through time to stop Starlight Glimmer from changing the course of history, Princesses Celestia and Luna give Twilight Sparkle the opportunity of a lifetime: the chance to study under Star Swirl the Bearded himself! Nothing can go wrong with such a powerful time travel spell in such capable hooves. Twilight knew there was something familiar about Clover the Clever when she read the Journal of the Two Sisters, but she never knew exactly how familiar.

Based off a theory developed by DRWolf001 and written with his permission, with additional hypotheses developed by The Brony Notion.

Featured on Aug 14, 2016
Featured on Nov 9, 2016
Featured on Aug 20, 2018

7/4/20 UPDATE: After attending a panel from my friend Vivid Syntax I've decided to mark this story as "complete" and start a new story for the rest of Twilight's time as Clover the Clever. More details in a blogpost.

The U.S. has fallen to tyranny, with money and power corrupting the minds of the populace, the vacant turmoil riddled battlefield formerly refereed to as the United Sates of America now belongs to the United Nations. But its not as bad as it seems. Now that they've brought peace to the states and have been rebuilding the once great cities. This is your story on how you, a former officer, is now a resident of Equis, though you're not all that you seem.

Crossover because I'll be using ideas from games like destiny, infamous second son, ect.

Will edit when I get better at writing so my chapters aren't shit.

It's my first fic so I wanted to do something that has been nagging me for years. Be as blunt as possible If you're going to critique my story, I want to know exactly what I do wrong and in the future take the time to wrack my brain so I can fix it.
~PheonixLyrics101
(And yes, I know that that is not how you spell phoenix, but theres a story behind my deliberate misspelling, but that is for another time.)

The Doctor has always been curious about equine folklore, but has also been too busy to look into it, going on interplanetary and time-jumping adventures with his partner. Luckily, Derpy knows of a good, yet confusing tale, a short story about four knights, their deal with Death, and the consequences that follow.

The swat kats have failed. They couldn't stop Dark Kat, The Metallikats, The pastmaster, and Dr Viper from destroying megakat City. Thanks to the Pastmaster. T'bone ,and Razor end up in another universe. Ending up in the magic land of Equestria with their jet..That is beyond repair. They must befriend the ponies and find a way back home..Before it is to late.

Code had lived in a time of turmoil, as war ravages his homeland. His life was saved by the Royal Sisters, with Luna adopting him as a night guard. His life had its ups and downs but with one of his most recent escapes from death, Luna personally sends him into an assignment which even his violent past could not see.

It all started with a friendly debate. Twilight thinks that Ponyville could not survive for thirty days without adults, Discord thinks that it could. Discord decides to settle the answer once and for all by putting every school aged colt and filly in Ponyville (plus Spike) into an exact replica of their town without any adults at all.

Only, Discord has to be able to prove to Twilight who won their debate. In order to keep Ponyville adult-free, he pulls filly Twilight from the past, who has nothing more than filly memories. And, while he's at it, he may as well bring in the rest of the filly mane six. Can the town survive for thirty whole days? And will the mane six be able to overcome the social barriers between themselves and the rest of the colts and fillies?

Rainbow Dash's rainboom never happened, so the elements of harmony were never found... and their holders never met. Without the elements of harmony to protect Equestria, a battle against a powerful foe was inevitable. With King Sombra's return, he enslaved his subjects and turned them into his own soldiers. With an army to back him up, Sombra declared war against Equestria. Now, every pony must pitch in to help the cause, and give it all they got to defeat Sombra before all of Equestria falls under his evil reign.

Sometimes, when your dreams are broken, something else has to fill the gap. As Rainbow Dash makes her way home from Cloudsdale, she'll find that something...
...Or die trying.

It never happened.

The Crystal Heart was never brought back to the Crystal Ponies. King Sombra successfully took back the Crystal Empire and declared war on Equestria.

Under powered and unprepared, Equestria is barely a match for Sombra's army. Everypony needed to do their part just for the war to reach a stalemate, but is their a glimmer of hope within the hearts of some?

Rarity has noticed that Applejack has an odd habit. Twi. Dash. Rares. Shy. Mac.

And now... Rara.

Which leads her to ask... what's up with that, anyway?

Coverart by Luminuara the Lumineko.