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Mystery

Mysteries be here! Go, Sherlock, go!

Order: Date Added

TThe ending that never happened
MLP: FiM
Romance
Drama
Sci-Fi
Twilight shatters knowing her greatest achievements were just a dream.
Twilight
Applejack
poohtter · 16k words · 63 3 · 1.3k views
TOPEN UP YOUR BUCKING EYES!!!!!
MLP: FiM
Drama
Mystery
Tragedy
Raven Inkwell figures out the real reason why Discord was easily forgiven for his crimes and plans to expose all the lies that have been told.
Violence
Profanity
Alt. Universe
Celestia
Discord
Main 6
Raven Inkwell
Grace Manewitz
Mpony1 · 34k words · 35 18 · 1.2k views
EThe Ponyville Files
MLP: FiM
Romance
Mystery
Did you know that Equestria had a secret service all along? Celestia only knows what happens there. Now Twilight is given access to learn more about its secrets. But what’s that? An agent is hiding among the ones closest to her!
Twilight
LastToTheParty · 4.4k words · 236 6 · 2.5k views
TBad Dragon's Short Stories
MLP: FiM
Anthology
Got a minute? It will take you even less to read one of these unrelated short stories designed for instant reader’s gratification.
Spike
Bad Dragon · 10k words · 34 39 · 1k views
TTwilight's Time of Terror
MLP: FiM
Comedy
Random
Twilight thinks that Fluttershy is in trouble after a phone call with her takes an unexpected and frightening turn.
Sex
Anthro
Twilight
Spike
Main 6
NintendoGal55 · 5.6k words · 39 6 · 1.7k views
ESuddenly Twilight Is The Dumb One
MLP: FiM
Comedy
Mystery
Random
Twilight’s still smart, it’s just that everypony else is smarter. She’d better find out why before her friends finish their spaceship.
Twilight
Spike
Main 6
Jay Bear v2 · 4.2k words · 261 3 · 2.8k views
TRumors of the Apocalypse Are... Somewhat Exaggerated?
MLP: FiM
Adventure
Thriller
The Ponyville rumor mill attempts (badly) to make sense of terrible apocalyptic happenings; but Twilight (eventually) discovers what happened and tries to (hopefully) set things aright
Death
Violence
Twilight
Trixie
Main 6
Maud Pie
Starlight Glimmer
SparklingTwilight · 12k words · 11 1 · 450 views
EFriðr's Guardian
MLP: FiM
Mystery
Sad
There is a place of legend, a place the should not exist. And yet, it is where she must go to find what is lost.
Alt. Universe
Twilight
Spike
Luna
Other
-Watcher- · 17k words · 20 1 · 416 views
TThe Unofficial Records of a Mare in Black
MLP: FiM
Horror
Mystery
Sci-Fi
My name is Twilight Sparkle, and this is an unofficial record of my experiences serving as an agent of P.O.U.T. Yes, it's against regulation, but buck regulation. I'd rather not fall apart when it counts and the documentation keeps me sane.
Death
Violence
Alt. Universe
Twilight
Spike
Celestia
Sunset Shimmer
the7Saviors · 57k words · 125 3 · 1.9k views
EHow to Climb a Mountain
MLP: FiM
Adventure
Mystery
At Celestia's advice, Twilight sets out to climb a mountain. But this mountain interferes with all types of magic on its slopes. And that is not the only hurdle as you climb. Will Twilight succeed in her journey? Based on the game ‘Celeste'.
Alt. Universe
Twilight
OC
Piemaster128 · 14k words · 29 0 · 848 views
TThe Dragon is in the Details
MLP: FiM
Dark
Comedy
Mystery
Twilight Sparkle is delirious from lack of sleep; Rainbow Dash is Rainbow Dash. They fight crime. Sort of.
Twilight
Rainbow Dash
Cast-Iron Caryatid · 10k words · 122 4 · 1.3k views
EThe Zap Apple Conundrum
MLP: FiM
Adventure
Mystery
Slice of Life
The signs of the Zap Apple harvest are weeks overdue. A worried Applejack seeks Twilight's help in figuring out what's wrong...
Twilight
Applejack
Lets Do This · 5.1k words · 72 1 · 1.2k views
EMagisight: Thaumaturgical Ocularity
MLP: FiM
Adventure
Mystery
A series of strange dreams and a new, burgeoning power sends Twilight on an adventure that will change her life forever.
Twilight
Rainbow Dash
Applejack
OC
Sunburst
PsychicKid · 133k words · 232 5 · 3.4k views
EA Fish Named Revenge
MLP: FiM
Comedy
Mystery
Random
Twilight gets herself a new fish named Revenge, which immediately goes missing.
Twilight
Rainbow Dash
Pinkie
Applejack
Rarity
DmitriTheWriter · 1k words · 13 1 · 487 views
TSpero
MLP: FiM
Romance
Mystery
Sad
For her entire life, Twilight Sparkle had been secretly observed and assisted by an unknown guardian. But when said guardian conquers Equestria, Twilight is left in a difficult position. Who is this pony, and why does he have such an interest in her?
Alt. Universe
Twilight
Spike
OC
Main 6
Piemaster128 · 131k words · 178 16 · 5.1k views
TThe Mare in White
MLP: FiM
Horror
Mystery
Thriller
Twilight Sparkle travels to a remote town to prove, once and for all, that there is no such thing as Ghosts. She's about to learn that some secrets are better left covered... | Original Gothic Horror story in time for Nightmare Night
Death
Twilight
Spike
OC
Other
Rockstar_Raccoon · 11k words · 98 10 · 1.9k views
TWelcome to my Nightmare
MLP: FiM
Dark
Drama
Mystery
Rainbow Dash has a really bad dream, but soon finds out she’s not alone. Can this be a coincidence and if not, what’s happening and why?
Twilight
Celestia
Luna
Trixie
Main 6
Bronyxy · 5.7k words · 14 2 · 610 views
TThe Phoenix Festival
MLP: FiM
Dark
Drama
Mystery
Princess Cadance resurrects her husband without his memories. Shining Armor suspects something else is going on.
Death
Sex
Twilight
Celestia
Luna
Cadance
Shining Armor
Trick Question · 9.6k words · 371 15 · 5.8k views
ETwilight Sparkle and the Cake Thief
MLP: FiM
Comedy
Mystery
On the longest night of the year, it is said that two slices of cake mysteriously vanish from the castle kitchens. But Twilight Sparkle has never been one to believe in superstition. Her mystery novels have taught her there is always an explanation.
Twilight
Spike
Celestia
Luna
Derpy
Noble Thought · 59k words · 89 3 · 1.5k views
EThe Armada Trilogy II: Beautiful Eyes
MLP: Movie
Adventure
Mystery
Thriller
In the sequel to The Lieutenant, Tempest Shadow goes back to her home town along with Twilight and Celestia. But while on their incredible journey, they come across dark forces outside of Equestria.
Twilight
Celestia
Tempest Shadow
Princess Skystar
TheMysteryMuffin · 47k words · 42 3 · 1.1k views
TMoamer's Return
MLP: FiM
Adventure
Drama
Mystery
When Canterlot is attacked and an age old nemesis emerges looking for revenge, ancient mysteries must be unravelled and old secrets unearthed. Who, or what, is Moamer?
Alt. Universe
Twilight
Celestia
Luna
OC
bonamb · 15k words · 11 0 · 721 views
TThe Ties that Bind
MLP: FiM
Dark
Adventure
Drama
This is the story of a bond forged between three fillies and the many trials and tribulations that strengthen that bond as they grow older. Friendship, secrets, and a dark journey awaits.
Gore
Violence
Death
Alt. Universe
Twilight
Celestia
Trixie
OC
Sunset Shimmer
the7Saviors · 283k words · 518 18 · 6.1k views
TThe Armada Trilogy I: The Lieutenant
MLP: Movie
Adventure
Mystery
Thriller
Tempest Shadow has an untold past that nopony really understands. One day, she tells Twilight Sparkle what actually happened on the day she lost her horn and also learns a valuable lesson; that everypony is truly wonderful in their own way...
Gore
Violence
Profanity
Twilight
Tempest Shadow
Grubber
TheMysteryMuffin · 38k words · 91 8 · 3.2k views
EFamiliar
MLP: FiM
Drama
Sci-Fi
Slice of Life
Twilight struggles to regain the familiarity of her daily routine, but something mysterious stands in her way.
Twilight
Spike
Discord
Main 6
Flurry Heart
Trick Question · 6.8k words · 151 5 · 3.1k views

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