The Apples were a normal farming family living in Ponyvile. Up till a young boy name Naruto suddenly appeared out of nowhere. Now in a world without ninjas or a need for them.
The changlings have taken over and all hope is long as none is left to stand against them. But in another world there is still one unicorn left. With the help of her old teacher's pet, Sunset must become the hero she always meant to be.
After receiving her Rainbow Power abilities, Fluttershy falls incredibly ill. Discord, going out of his way to help, notices that she has physically changed in strange ways. Little did he know that Tirek wasn't his only problem...