My Top 5 (without TOO much clop)

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  The Code's Apprentice For a thousand years, the Code of Harmony has ruled Equestria, and the Code of Dissonance has sabotaged its works at every turn. Now the war for control over the land will come to a head, and one unicorn's decision may decide the fate of all. by Lapis-Lazuli and Stitch 149,573 words · 1,137 · 46
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  Embracing the Darkness Twilight Sparkle is left with a scar that will permanently change the rest of her natural born life. by BlueAzura 61,534 words · 839 · 31
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  Twilit Blood Pact What happens when magic returns from death to a distorted land she once called home?~Vampony imbound by Ink Stroke 45,823 words · 611 · 26

My Top 5 (with clop)

My Other Top 5

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  Symphony Shattered With nopony to go to after a madmare bestows her with a gift, 'tavi takes things into her own hooves by SteampunkBrony 9,959 words · 200 · 7
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  The Secret Life of Rarity Rarity has a deep dark secret that she cannot control but must hide from the world. by BronyWriter 147,542 words · 1,722 · 94