The best ones!

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  A Puppet To Her Fame My unicorn parents called me a worthless mud pony. They pushed me every day to overcome my lowly status. When I woke up one morning with my cutie mark, I thought they would love me. I couldn't have been farther from the truth. by Kaidan 29,713 words · 1,695 · 72
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  Starlight Over Detrot: A Noir Tale In the decaying metropolis of Detrot, 60 years and one war after Luna's return, Detective Hard Boiled and friends must solve the mystery behind a unicorn's death in a film noir-inspired tale of ponies, hard cider, conspiracy, and murder. by Chessie 1,460,507 words · 1,261 · 47
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  Fallout Equestria: Tales of a Courier Reloaded This is the story of Clover and his quest for revenge. by a friendly hobo 222,874 words · 391 · 30
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  Doctor Whooves - The Series: Episode Four - Only Skin Deep The Doctor, Twilight, Rarity and Pinkie Pie visit their first alien world in the TARDIS; the planet of Qing, and meet its exotic inhabitants, the Quilin. But not everything in this near-perfect utopia is as it seems. by Loyal2Luna 63,644 words · 723 · 21
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  Spiders and Magic: Rise of Spider-Mane Spider-Man is brought to Equestria for a second chance at life, but his luck may ruin his opportunity before it can truly begin. by Maximus_Reborn 351,265 words · 2,943 · 263