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Long Live the 12th (Sorry, not Capaldi)

Doctor Whooves - The Series: Episode One - The Pinkie Conundrum After the harrowing events of "Traveller," the Doctor is forced into having some downtime in Ponyville while the TARDIS rests. Meanwhile, Twilight goes to confide in her beloved mentor, but ends up learning far more than she expected. by Loyal2Luna 30,783 words · 1,038 · 16
Doctor Whooves - The Series: Episode Two - Game of Stones Twilight, Rainbow and Applejack travel 3000 years into the past with their new friend the Doctor, to the ancient city-state of Roan. They meet the famous Leonard DiHoovsie, and find themselves embroiled in a deep mystery with dark implications. by Loyal2Luna 119,156 words · 970 · 16
Doctor Whooves - The Series: Episode Three - Along Came a Spider When Zecora falls ill with a deadly sickness, it falls to the Doctor, Twilight, and Fluttershy to find a cure in her ancestral homeland Zebrica. All the while dodging the twisted machinations of an old foe from the Doctor's past. by Loyal2Luna 105,775 words · 843 · 13
Doctor Whooves - The Series: Episode Four - Only Skin Deep The Doctor, Twilight, Rarity and Pinkie Pie visit their first alien world in the TARDIS; the planet of Qing, and meet its exotic inhabitants, the Quilin. But not everything in this near-perfect utopia is as it seems. by Loyal2Luna 63,644 words · 723 · 21

HiE's

Chaotic Harmony A new friend teaches the girls what true chaos is by shirotora 190,917 words · 780 · 93
Project: Sunflower As the Earth is under threat, humanity reaches out for one last hope of salvation. by Hoopy McGee 243,094 words · 5,162 · 92
No, I Am Not A Brony, Get Me Outta Equestria! A non-brony is transported to Equestria by BronyWriter 110,814 words · 4,713 · 228
A Novice Swordsman in the Canterlot Court Some are born great, some achieve greatness, and others have greatness thrust upon them.-William Shakespear. This story is about the latter. Alan Williams, a man trying to take a peaceful camping trip, finds himself in Equestria. Greatness follows. by DungeonMiner 222,058 words · 2,296 · 190

Walter 'Heisenberg' White's Formula

Past Sins Can Nightmare Moon, reborn without her hate, ever escape her past? by Pen Stroke 201,810 words · 12,539 · 382
Visionary A tale of a changeling's reformation. by Razorbeam 109,800 words · 1,960 · 55
It Takes a Village Spike only wants things to stay the same. Time, however, has other ideas. He's going to need help... by determamfidd 148,765 words · 3,620 · 66
For the Ones we Love Spike must save Equestria from a newborn evil. But will he be able to stop it? by FlimFlamBros. 151,467 words · 756 · 46
Learning ABCs - Adorable, Bothersome, Chaotic Twilight unwillingly starts seeing something more that just chaos in a certain Draconequus. by Isopod 116,679 words · 1,776 · 39