Adventure

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  Kinetics On behalf of her sister, Princess Luna tries to elevate the studies of her new student, Twilight Sparkle. However, when their plans backfire, they find themselves in a new world where magic is lost, and then have to survive the turmoil in its place. by Habanc 117,057 words · 384 · 10
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  Under The Northern Lights Luna and Twilight travel to the northern land of the reindeer on a diplomatic mission by CoastalSarv 222,689 words · 623 · 11
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  Past Sins Can Nightmare Moon, reborn without her hate, ever escape her past? by Pen Stroke 201,810 words · 12,539 · 382
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  The LUNA Project A science fiction origin story. An alicorn foal awakens alone in an abandoned world. by The Equestrian Gentlecolt 21,214 words · 310 · 10
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  Paradise Celestia and Luna were born as earth pony foals in a dangerous world. They must rise from nothing to become the princess we know, upsetting chiefs, gods, and the very forces of nature in the balance. by SlyWit 14 words · 1,406 · 28

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  Luna's Story: Rise of the Lunar Stallions Luna falls comatose and is revived by the love-sick kiss of one of Celestia's guards. by Aegis Shield 44,461 words · 1,172 · 32
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  Luna's Story 2: Wrath of the Moon Champion Luna's Lunar Stallions struggle with a slippery pony in white lunar armor. by Aegis Shield 35,300 words · 737 · 29
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  Luna's Story 3: Long Live the Night Princess Luna must battle a possessed Celestia with her Lunar Stallions. by Aegis Shield 37,463 words · 678 · 20
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  Changeling Heart and the New Moon Luna asks a favour of Chrysalis. by ambion 87,575 words · 400 · 18

HiEs

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  The Thessalonica Legacy by Dashukta 70,129 words · 568 · 18
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  Falling Stars A cosmic accident has brought two 31st-century mercenary units to Equestria. Any hope for peace is destroyed as greed flares and battle lines are drawn, and the ponies find themselves thrust into the horrors of war. Will they rise to the challenge? by Rokas 265,395 words · 767 · 43
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  Arrow 18 Mission Logs: Lone Ranger A mission to investigate a far off world takes an interesting twist. by AdmiralTigerclaw 66,018 words · 6,217 · 88
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  ARTICLE 2 An alien crash lands in Equestria. It calls itself human. by Muppetz 228,756 words · 5,174 · 177
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  Anno Domini Ash to ash, dust to dust. by chrumsum 14,968 words · 1,300 · 57

Strange but awesome

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  The Equestrian Spring Nine months was all it took for one earth pony to put Princess Celestia on the defensive. by Chocolate Milk 25,005 words · 80 · 5
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  Drop of Moonshine A thousand years is a long time to go without a good, stiff drink by Pen Stroke 10,347 words · 3,608 · 52
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  ASMD In her boredom, Luna finds an incomplete spell and finishes it, unaware of what it will lead to. by Rokas 55,987 words · 261 · 17
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  Stormriders: Luna's Own Action takes to the skies as the 368th Night Fighter Wing battles to defend Equestria! by PonyMarine 33,214 words · 22 · 1
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  Luna, There's a Sentient Race Inside Your Mane A fellow pony points out a spacefaring race inside Princess Luna's Mane. Luna is not happy. by boardgamebrony 1,642 words · 2,488 · 34