Top Favourites (Part 1)

Rites of Ascension Twilight makes a new spell and starts the gears of fate with her ascension to alicornhood. (Writing started before Season 3.) by CvBrony 657,443 words · 2,865 · 75
Split Second Twilight Sparkle broke time when she got her cutie mark. Now there's two of her with two different talents. by wille179 153,201 words · 2,017 · 75
The Moon's Apprentice Twilight Sparkle failed her entrance exams for Celestia’s school. Worse, she is a danger to both herself and others, resulting in her magic being suppressed. Dreams crushed and now one of the weakest unicorns, a nightmare comes to her. by Forthwith 412,134 words · 3,418 · 150
Apotheosis Twilight and Luna explore a land that appears on no map by Daetrin 46,300 words · 2,646 · 45
Sunset Twilight Sparkle discovers a secret in her past that will forever change her future by Ciroton 37,836 words · 1,267 · 43

Top Favourites (Part 2)

Growing Pains Action-Adventure with Romance and a hint of Horror, features all the Mane Six and some Backgrounders by Peroth E 375,589 words · 812 · 42
Her Mother's Daughter Twilight, handmaiden to the Princess, is asked the impossible. And accepts. by Nadake 115,157 words · 1,458 · 42
Sharing the Night Twilight becomes alicorn of the stars. This is sort of a problem, because Luna kind of already was alicorn of the stars. Oops! by Cast-Iron Caryatid 234,498 words · 3,778 · 103
Of the Hive After the royal wedding, a new changeling hive makes its presence known and wishs to open diplomatic relations. Twilight decides to use this opprotunity to learn more about them, but ends up getting far more than she bargined for. by law abiding pony 77,661 words · 2,863 · 53
Twilight Sparkle of the Royal Guard Twilight Sparkle is the newest member of Celestia's Royal Guard. Fresh out of the Military Academy, she's ready to prove herself, but will her first assignment be too much for her to handle? by King of Beggars 80,475 words · 2,550 · 42

Top Favourites (Part 3)

Twilight the Third The most wanted mare in Equestria, Twilight Sparkle is the greatest thief in the world. As she follows in the hoofsteps of her grandmother, she's joined by friends and chased by family, all while trying to make a few bits! by MagnetBolt 138,597 words · 269 · 10
Under Her Wings Foals are often more than a hoof full, particularly if your experience with them is limited. When you make a rash decision, deciding to take care of a filly with near unlimited power for example; it becomes even more complicated. by Karrakaz 161,384 words · 1,697 · 36
The Guardian The search to find the right pony to serve as your bodyguard can take a lifetime. Finding the pony you want to spend your life with can take just as long. Fortunately for Rarity, she finds both in one pony. by Karrakaz 31,733 words · 187 · 10
Mirror's Image Twilight never was a unicorn. And she didn't even know it. by Evilpresident 224,822 words · 3,199 · 81
A Different Bridal Path Many stories have Twilight telling off her friends after the Wedding. But what if she felt she had to redeem herself, and it fell to someone else to give them the 'reason you suck' speech? Now a full story of the consequences of a single small change by Stainless Steel Fox 69,674 words · 595 · 21

TThe Bug in The Cave
MLP: FiM
Drama
Slice of Life
After being left behind in the badlands after her expedition is attacked by a dangerous monster, Twilight Sparkle must survive a hostile, alien environment. Lucky for her, she has some help from one of the natives: A curious changeling named Thorax.
Violence
Twilight
Chrysalis
Changelings
Thorax
Pharynx
Skijarama · 35k words · 255 4 · 2.4k views
EThe Sunset of a Frozen Princess
MLP: FiM
Equestria Girls
Romance
Drama
Slice of Life
Sunset Shimmer is lost in a world that she can't move on from. Twilight Sparkle is lost in a world that moves on without her. Together, they each try to find their way again.
Twilight
Spike
Sunset Shimmer
DaylightHobbyist · 53k words · 221 9 · 1.6k views
TTime Enough For Three
MLP: FiM
Romance
Adventure
Twilight finds herself wanting to know more about Celestia and Luna. So she ends up time travelling!
Alt. Universe
Twilight
Celestia
Luna
OC
Valtyra · 86k words · 471 20 · 5k views
TIll Winds
MLP: FiM
Romance
Adventure
Mystery
It had taken two failed invasions, an arduous civil war, a foalnapping, and the promise of a date, but Chrysalis can finally be counted among Equestria's allies. Unfortunately, the rest of her race might not be so easy to convince.
Twilight
Rainbow Dash
Celestia
Other
Chrysalis
ClanCrusher · 72k words · 625 13 · 6.4k views
TA Dirge For The Sun
MLP: FiM
Dark
Mystery
Tragedy
Twilight has been chosen as this year's addition to queen Nightmare Moon's mysterious cadre of personal students. She gets to live in a castle, receive lessons from their sovereign, yet her parents remain sad for some reason.
Profanity
Alt. Universe
Twilight
Nightmare Moon
Sunset Shimmer
Jest · 7k words · 127 9 · 1.3k views
TTruth or Dare
MLP: FiM
Slice of Life
The Mane 6 decide to play Truth or Dare. Like all good games of Truth or Dare, they'll laugh, they'll cry, and it'll get a little weird.
Sex
Main 6
Zontan · 5.4k words · 439 20 · 3.3k views