Mystery Stories
Founded by ThisPonyIsNamedSinewave · Report

Mostly-Mystery

For stories that aren't mysteries, but a mystery plays a large part.

Order: Date Added

TSherclop Pones and the Cloudsdale Crimes
MLP: FiM
Sherlock
Dark
Adventure
Mystery
Still engrossed over the year-old case of Pinkie's Cupcakes, Sherclop Pones receives a consultation from his illustrious brother to retrieve the vital 10th page of the documents concerning Cloudsdale's Weather Production.
Death
Crossover
Spitfire
Derpy
OC
A Sherlockian Brony · 25k words · 218 views
E40 Years
MLP: FiM
MLP Gen 5
Adventure
Mystery
A community collaboration of a tale that spawns across all generations of My Little Pony.
Alt. Universe
Crossover
Main 6
Grogar
Mane 5
bookhorse125 · 41k words · 72 3 · 1.4k views
TYOULOVEME.VBS: A Cyberpunk Short
MLP: FiM
Mystery
Sci-Fi
It's Nightmare Night and a fresh body arrives at the morgue. Was it murder, or just another victim of the mean streets?
Death
Alt. Universe
OC
TheManFromAnotherTime · 5.9k words · 10 0 · 139 views
TBlood of the CHIMERA
MLP: FiM
Dark
Drama
Sci-Fi
A normal pony, named Twilight Sparkle, has become a chimera. After finding others like her, they become superhero’s. She and her friends try to stop the cause of what is changing innocent ponies into unusual chimeras
Narcotics
Violence
Alt. Universe
Fluttershy
Twilight
Discord
Shining Armor
Main 6
discordjediknight · 123k words · 31 2 · 819 views
TVanishing Act
Equestria Girls
Mystery
Sad
Slice of Life
How do you make the invisible visible? Make them vanish.
Alt. Universe
Sunset Shimmer
Sunny Flare
Main 7 (EqG)
Shadowbolts (EqG)
Juniper Montage
redandready45 · 153k words · 222 17 · 8k views
ECAM_09 IS OFFLINE
MLP Gen 5
Adventure
Mystery
Thriller
Pipp Petals enlists her friends' help to livestream a paranormal investigation of the long-abandoned Canterlot Castle. She is excited by the idea, but she might soon realize that some things are best left forgotten...
Mane 5
Misty
RunicTreetops · 15k words · 55 2 · 888 views
ERules for Dee
MLP: FiM
Mystery
Hide when company is over. Keep your wings covered. Never speak the mysterious name "Rainbow Dash." Mum's rules keep Dee safe, but not when a scary purple unicorn shows up. One asking dangerous questions about Dee.
Rainbow Dash
OC
Starlight Glimmer
Casketbase77 · 4.7k words · 214 5 · 2.5k views
EThe Train Ride
MLP: FiM
Mystery
Slice of Life
Herman always thought that ponies were an exceedingly friendly bunch, and he figured it was in their nature to be kind and open to all strangers—even to those of different races. But what if he was wrong? What if there was another explanation?
Human
OC
Royal Guard
Snuffy · 50k words · 1,013 29 · 14k views
TDashing Through Paranormalities
Equestria Girls
SCP
Adventure
Mystery
Rainbow Dash gets overtaken by a truck while riding a motorcycle. She won't rest until she has beaten it.
Violence
Crossover
Rainbow Dash
Derpy
Main 7 (EqG)
gapty · 38k words · 36 1 · 991 views
TSherclop Pones and the Adventure of Pinkie's Cupcakes
MLP: FiM
Sherlock
Dark
Adventure
Mystery
With criminal activity at an all-time low and the papers uninteresting with headlines of a royal wedding, it is no wonder Sherclop Pones longs for a case. To his utmost delight, one had been presented to him—that is the disappearance of Rainbow Dash
Crossover
Rainbow Dash
Pinkie
Derpy
A Sherlockian Brony · 42k words · 47 2 · 1.2k views
TA Camera
MLP Gen 5
Mystery
Random
Sci-Fi
Look through the camera screen, Can you see something?
Sex
Gore
Profanity
Crossover
Human
Alt. Universe
Hitch Trailblazer
Izzy Moonbow
Sunny Starscout
Pipp
Zipp
Miro MM · 19k words · 899 views
TA Boundary Apart
Equestria Girls
Adventure
Mystery
Slice of Life
Sunset Shimmer has been noticing odd stuff with Steely Armor. Is it just a personal secret or something bigger?
OC
Sunset Shimmer
Sci-Twi
Main 7 (EqG)
armid · 18k words · 10 1 · 253 views
ERoad Trip
MLP: FiM
Adventure
Drama
Mystery
Biding his time in the ether, King Sombra is summoned by a surprising pony to join him on an epic quest to the Dragon Lands.
King Sombra
Starswirl
fore shadow · 19k words · 10 0 · 548 views
TA Constant State of Atrophy
MLP: FiM
Comedy
Drama
Mystery
Flash Sentry and Octavia have a lot in common. One of those things is failed relationships. Another is the hotel hallway they're currently trapped in.
Sex
Profanity
Octavia
Flash Sentry
mushroompone · 47k words · 33 1 · 408 views
EVenom Kiss
MLP: FiM
Mystery
The kiss of a devil, what is the kiss of the devil. Is it real or make-up? What if the kiss of the devil is not kissing at all? But something that can kill quietly without any pony knowing.
Anthro
Alt. Universe
Celestia
OC
keithsterling · 2k words · 233 views
EThe Architect
MLP: FiM
Mystery
What happens went a mare decides to marry a different stallion? What about the stallion the mare snub? Can he forget what happened?
Anthro
Alt. Universe
Luna
OC
keithsterling · 5.6k words · 203 views
EThe Incognito
MLP: FiM
Mystery
Some secrets are best kept in the past but want would happen went that past return to the present. How about history you never know about?
Anthro
Alt. Universe
OC
Nurse Redheart
keithsterling · 5.7k words · 221 views
EThe Problem at the Cavaliere Mansion
MLP: FiM
Mystery
After receiving a request from Lord Faxhir Cavalier, the owner of Cavaliere Estate in Coltifornia in the City of Grazing hills, Princess Celestia Silverlight asked her only son Prince Somnus Silverlight to investigation.
Anthro
Alt. Universe
Celestia
OC
keithsterling · 6.6k words · 230 views
EThe Ritardando
MLP: FiM
Mystery
Octavia Melody the most famous Cello Player in all of Equestria. Who taught her how to play so well? No pony knows except Octavia herself, but she's not talking.
Anthro
Alt. Universe
OC
Octavia
keithsterling · 12k words · 318 views
TBreathtaking Banality
MLP: FiM
Horror
Mystery
Sad
One day, Nurse Redheart is tasked with taking care of a patient that is far too normal – and that's the problem.
Death
OC
Other
Nurse Redheart
Snowheart
Sweetheart
Ice Star · 4.5k words · 83 8 · 2.6k views
TReflections of the Past
MLP: FiM
Adventure
Comedy
Reports are seeping in from the Island Nations, tales of towns being raided. Spike goes to investigate along with Queen Novo on who is behind this.
Spike
Changelings
Queen Novo
Phaoray · 12k words · 11 1 · 544 views
TApropos of the Sinners
MLP: FiM
Dark
Drama
Slice of Life
(Featured on EqD) A dark and tragic event occurred some years ago in Ponyville, and it involved an equally dark and dysfunctional family. They are still discussed among us to this day.
Violence
Sex
Death
OC
SpitFlame · 194k words · 20 1 · 754 views
EPrincess Trixie of Transylmaneia
MLP: FiM
Comedy
Drama
Mystery
A magician never reveals her secrets. The Great and Powerful Trixie just happens to have a few more secrets than most magicians. For example, she’s actually a princess of Transylmaneia. And she may or may not have doomed Equestria to eternal night.
Trixie
Starlight Glimmer
Bat Pony
AlexTFish · 13k words · 94 0 · 1.6k views
TStranger Friends
MLP: FiM
Dark
Adventure
Mystery
If the Stranger Things story took place in Equestria
Crossover
Alt. Universe
Spike
Shining Armor
Main 6
CMCs
Tangerine Blast · 8.7k words · 19 1 · 937 views

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