Previously on Equestria's Heroes:
After the classes our heroes and the students were stressed out and a fight nearly breaks out.
Later our heroes and the rest of the mane 7 try to tell Twilight that the rules are stressful but she won't listen.
Having a enough of it, Hibiki and Shinji join the six students to skip class leaving Yusei, X and Rainbow Dash to look for them.
At the same time Chancellor Neighsay arrives to inspect the school.
Things soon take a turn for the worse as Family Day was ruined as Chancellor Neighsay finds out about the six students inhabbiting the school and shuts it down.
What will happen next?
https://m.Right now, we are seen at a forest as we see a hooded figure, waiting for someone.
We then see a unicorn with green fur, a ginger orange mane and a cutie mark with a lady came by as she had a camera around her neck.
"Is it done?" The hooded figure asked.
"Yes, its done." The unicorn said.
The unicorn used her magic to lift pictures which were revealed to have pictures of the mane 6.
"You did good...Chrysalis." The hooded figure said.
The pony then smirked before her body then changed into a changeling. However her body was black, her manebwas silky and she had holes in her legs. This was Queen Chrysalis. The former Queen of the Changelings.
If you want to how she got those pictures, it started a day after the school of friendship was officaly openned.
(One week ago)
It was a peaceful day, and Twilight and the others were in her office. Waiting for a photographer to appear, and the heroes were with them.
"I've been planning this retreat for weeks, and we're already 10 minutes behind." Twilight getting impatient. "Where is that photographer?!"
"Relax, Twilight." X assured. "She's probably just a little lost in the halls."
Then suddenly, the photographer barged in with a panicked look.
"I'm so sorry!" She cried. "Can you forgive me? I don't expect you to forgive me... Forgive me?" She smiled.
Twilight groaned.
"Of course." Starlight said. "I'll help you set up your-"
"Princess Twilight, thanks so much for this!" The photographer suddenly approached her. "The Canterlot Historical Society is thrilled to document the friendship work your teachers do! Let me just pretty you all up!"
And then she pulled a strain of hair from Twilight's mane. And then Fluttershy, Pinkie, Rarity, and removes a strain on Applejack's hat. And then plucks a strain from Rainbow's tail.
"Ow! Hey!" Rainbow glared.
"Don't want a single hair out of place, do we?" Said the photographer. "This is for the history books! Now.." She then took a photo of them, and was done.
"Well, that's that! Bye!"
"Waaaait!" Pinkie stopping her. "You forgot Starlight, Hibiki, Yusei, X and Shinji! They need a picture, too!"
"'Kay!" The photographer said.
She snaps a photo of them.
"Now I'll get out of your manes. I know how busy you are."
She was soon gone, but Yusei somehow felt unsure about her.
"You okay, Yusei?" Twilight asked.
"I don't know." He said. "Something about her seems off."
(Right now)
We are now in the present as the hooded figure was placing pictures of the mane 6 onto the trees.
"There." He said. "Now to get started."
"Now for the last time," Chrysalis began annoyed. "Will this actually work?!"
"And I told you it will work...IF YOU STOP ASKING ME LIKE AN IMPATIENT CHILD!" The hooded figure snapped which made Chrysalis step back in fear and nodded as the hooded figure went back to work. "Its simple to make clones of ponies. All I need is a picture of the pony along with a piece of their mane and their cutie mark."
The hooded figure motioned Chrysalis to fire at the trees which she did as she made symbols of the mane 6's cuties marks.
"So, why are we doing this again?" Chrysalis asked which made the hooded figure groan annoyance.
"You fool." He began. "According to you, these six ponies are connected to the Elements of Harmony. The most powerful weapons in Equestria. Since these will be identical clones to those ponies they will be able to use them aswell."
"So that means I'll be able to stop Twilight and her medlesome friends?" Chrysalis asked with a hint of hope.
"Yes. But should things go downhill I have a backup."
The hooded figure pointted to a bed that held a red haired young man who wore a purple suit.
"Whatever it takes." Chrysalis scrowled. "Starlight Glimmer must pay. She stole my hive and turned my subjects against me! So I'll destroy her friends as she watches, and then, I'll destroy her!"
"Very well." The hooded figure began. "You know what to do."
"With the Elements under my control, I'll build a new hive of Earth ponies, Unicorns, and Pegasi, and I will rule as Queen once again!" Chrysalis shouts before she then zaps the 6 trees, and the beam connects to all of them. And then the trees glowed with green cracks, and then they peeled back. And soon copies of the Mane 6 appeared.
(Meanwhile)
It had been a few days ever since the school of friendship was closed. Everyone was sad about. The heroes were sad since they lost their friends. Hibiki and Shinji stayed in the room they were allowed to sleep in and wouldn't come out.
However, the most distraught was Twilight who was in her room in a fort of pillows with the lights off, and sad music was playing. Then Spike, Yusei and X came in to check on her.
"Um, Twilight? Are you ok?" X asked only to get a response of a mix of a whine and groan.
Yusei then turns the record off and he then grabs a pillow showing Twilight's face and some tissues were by her. Using her magic, Twilight brought the pillow back covering her face, clearly not in the mood to be seen.
"Looks like she's still depressed of the school's closing." Yusei said as X and Spike nodded in agreement.
"Ugh. Look on the bright - sure, the EEA closed your Friendship School , but now you've got time to do other stuff!" Spike said climbing on Twilight's bed. "It's like being on vacation!"
Then Twilight got up throwing the pillows off and Spike. "A failure vacation! I'm supposed to be the Princess of Friendship, and all I did was make enemies with Equestria's allies, upset my friends and get my school... unaccredited! There is no bright side!"
She then flops down on her bed. And blows her nose.
"Well that went well." Yusei muttered sarcasticly.
"Okay, then. We're gonna then back up." Spike said with a smirk. "Operation Cheer-up is a go!"
Rainbow then flew in and open the currents. But Twilight just covered her face with her wing.
"Come on, Twilight!" Rainbow said in a brightful mood. "You can't sit around in the boring dark all day!"
"Exactly!" Applejack said walking in with the others. "What you need is a double dose of Granny Smith's apple mash!"
Applejack brought out a spoon with some mash, Twilight peeks through her wing but wasn't in the mood for that.
"Well that didn't work." X muttered.
"Whenever I'm sad, a hug from Angel Bunny always makes me feel better!" Fluttershy said.
Angel pokes out of her saddlebag, and Fluttershy gestures to hug Twilight. Angel shrugged and went to give Twilight a hug, he pulls her wing back and hugs her. But it didn't work and made him sad.
"Oh!" Fluttershy brought the sad rabbit back in her bag. "Uh... Maybe it's just for me."
"And maybe we should stay back before we get infected." Spike said.
"Yeah, we don't want a pandemic." Yusei muttered.
"I find that nothing brightens my mood like a new ensemble!" Rarity said as she puts a blue and purple jester suit on Twilight.
"Thanks Rarity, it's a great dress... " Twilight began before she then cries. "for somepony who knows how to run a school!
She then blew her nose the the outfit.
"You didn't tell me this was a pity party!" Pinkie whispered to Spike, Yusei and X with a tray of cupcakes on her head. "I would've brought ice cream!"
"I appreciate you trying to make me feel better, but not everything can be fixed with dresses and cupcakes." Twilight said depressed.
"WHAT?!" Pinkie screamed.
Twilight pulls out of the dress and leaves. "I just need some time to be alone and think."
The others watch as Twilight leaves the room.
"Man, I can imagine Hibiki and Shinji feeling like this." X muttered.
"I got an idea!" Yusei said before dragging X who had an confused look.
(Meanwhile)
Back over with Chrysalis, the hooded figure and the clones of the Mane 6.
"Listen to your Queen!" Chrysalis ordered. "We must retrieve the Elements of Harmony!"
"Hunting down some lame Elements?" Cloned Pinkie said. "This is the worst day ever!"
Then Cloned Fluttershy kicked some dirt in Cloned Pinkie's face. "No. Now it's the worst day ever!" She then laughs cruelly.
"Those Elements are mine!" Cloned Rarity said greedily. "Along with this rock! Oh, and that twig!"
"I got all kinds o' Elements right here under my hat." Cloned Applejack said. "I'll let you see 'em for 5 bits."
Cloned Rainbow scoffs. "Losers."
"What is going on?!" Chrysalis hissed at the hooded figure. "Why aren't they listening to me?!"
"Hmm, it seems to be so because your negative emotion." The hooded figure said.
"What?" Chrysalis asked with venom.
"You possessed a lot of negative energy. Meaning that not only the clones are a darker shade, but they also are the polar opposite of what the REAL ponies are."
"I see."
"Why didn't you just attack them?" Cloned Twilight asked Chrysalis.
"Excuse me?" Chrysalis turned to her.
"You were close enough to pull hairs from their manes." Cloned Twilight said. "Why not just take revenge then?"
"They've defeated my army. I know better than to strike alone. I need-"
"Friends?"
"Servants!" Chrysalis snapped correctly. "And the power of the Elements!"
"Speaking of the name, where are these elements of harmony?" The hooded figure asked.
"The location of the most powerful weapon in Equestria isn't something made known to just anypony. I learned they were hidden somewhere in this forest." Chrysalis replied.
"Yeah, well, it is a big forest." Cloned Twilight said with a smirk.
Chrysalis growled.
(Meanwhile)
Twilight heads outside and looks upon her School of Friendship.
"I wondered how long you'd take to get tired of pillow-fort pouting." Said a familiar voice.
Twilight looks back to see Starlight smirking, and with Yusei and X.
"Everypony's already tried to cheer me up." Twilight said. "It won't work."
Starlight laughed a bit. "We're not gonna cheer you up. We're gonna tell you what you did wrong."
"What?!" Twilight facing them.
"You gave up too easily." Starlight, Yusei and X said.
Twilight just gave a small glare.
"Hey, you made me a guidance counselor." Starlight said.
"And you made me, X, Hibiki and Shinji students." Yusei said.
"That means tough love." X said.
"So was I, when you met me." Starlight reminded. "But you showed me that when you know in your heart something is right, you stand up for it! You did that for me. Why not for this?"
"I can't go against the EEA! They're in charge of all the schools in Equestria!"
"And you're in charge of all the friendship in Equestria. Why should you let somepony else stop you from doing your job?"
"Especially from a cold hearted racist pony like him." Yusei commented with his arms crossed.
Twilight then brought out the rulebook again. "But the EEA rulebook..."
"Oh, forget the damn book for once!" X snapped swatting the book out of her hoof and into the water. "Geez, does anything always involve books for you?"
"You have no idea." Starlight replied. "Anyway, doesn't matter. You can write your own rules! Because you are doing something new, something important."
"You're right! Twilight said agreeing with them. "Why we're doing this is way more important than how we're doing this! And we are doing this!"
"Now that's the Twilight I know." Starlight said happily. "How can I help?"
"You already have." They pulled in for a hug as Yusei and X smiled at the scene.
"Ok, enough with the sappy stuff." X said. "Now let's get focused on saving the school.
The others nodded in agreement.
(Elsewhere)
Meanwhile in the throne room, everyone was doing their own thing.
"Guess what? "Twilight said bursting from the doors. "The School of Friendship is back in business!"
"What?!" Rainbow Dash shouted in shock.
"But why?" Rarity asked.
"Oh no." Fluttershy muttered in worry.
"Bad idea."Applejack said.
"Do we still get to guess?" Pinkie said.
"No offense, Twilight, but teaching at that school was the most boring horrible awful thing ever." Rainbow said.
"Uh, pretty sure she's gonna take offense of that." Applejack whispered.
"No, Rainbow Dash is right." Twilight said. "I owe you all an apology. Even you Yusei and X. I was so focused on doing things the EEA way I didn't listen to any of you! I'm sorry. I promise this time, we'll run the school the ways friends should: together."
"So... we'd be allowed to teach however we want to?" Rarity asked.
"No more scary pop quizzes?" Fluttershy asked.
"Confetti cannons for everycreature?" Pinkie asked.
Then party cannons appeared and each one matches their colors. Even for Yusei and X.
"How does she do that?" X whispered to Yusei.
"I think we shouldn't question it." Yusei replied.
"Whatever you need to teach the Elements of Harmony."Twilight agreed.
"Yahooo!" Pinkie cheered and the cannons went off.
"Well in that case, we're behind you 100%, Twilight!" Applejack said.
Spike clears his throat. "Just two small problems? The school is still unaccredited..."
Twilight twitches her eye.
"and we don't have any students!"He finished.
"Really Spike? You had to make things sound harder?" X asked.
"Hey!" Spike defended. "I'm just telling the truth!"
Twilight had an idea. "I'll take care of the first part, if you 5 can round up our class. Yusei, X, you both get Hibiki and Shinji."
"Totally!" Rainbow said "Uh... how?"
"Roundin' up the pony students ain't gonna be a problem, but..." Applejack began.
"The creatures from the other kingdoms seemed pretty upset with us." Fluttershy finished.
"Pfft, nonsense!" Rarity said. "I'm certain we can win them over with our charm and style!"
(Elsewhere)
At Yakyakistan, Prince Rutherford was sitting on his throne still upset. Then Pinkie came in with a box of cupcakes.
"Cupcake-gram for Prince Rutherford!" She said.
"Why pink pony here?" He said. "Yaks mad at ponies!"
"Because..." Pinkie shoves a cupcake in his mouth and eats it. "You don't have to be mad anymore! We're reopening Twilight Sparkle's School of Friendship! And it's gonna be super-oopa-duper- better than before! We're..."
(Elsewhere)
"Ever so sorry about the misunderstanding, all the creatures are of course welcome." Rarity said talking to Ember.
(Elsewhere)
"We would be really happy if you sent your student back to class." Flutthershy said talking to Thorax.
(Elsewhere)
"It won't be the same without them!" Applejack said talking to Seaspray. "We're open and ready to start teachin'..."
(Elsewhere)
"Right now!" Rainbow saidtalking to Grandpa Gruff. "So? What are you waiting for? Get your student and let's go!"
"Not happenin'." The old Griffon said.
"Do you need me to do the whole apology and explanation thing again?" Rainbow groaned in annoyance. "Okay."
"Listen, missy!" Gruff said stopping her. "It's not happenin' because..."
Our student is gone!
What?!
(Meanwhile)
Yusei and X walked to the room that Hibiki and Shinji were in as Yusei knocked on the door.
"Hey guys, its us." He began. "I know you both are upset but come out. We have some news."
There was no response. Yusei knocked on the door again but this time the door slowly openned to reveal that it was unlocked.
"That's...not a good sign..." X muttered.
Yusei and X rushed into the room and saw that Hibiki and Shinji were gone.
"Oh crap!" Yusei excalimed.
"Yusei! X! What's going on?"
The two said heroes turned to see Starlight and Spike who had concerned looks.
"We have a problem." X replied with a nervous look on his face.
https://m.