Ninety days later, Discord finally is let free from his stone prison. As soon as he's fully free, he returns home and is greeted with excited hugs from Fluttershy, Screwball, as well as all the rest of the Mane Six. Everypony is glad he's back.
"I'm so glad you're back, daddy," says Screwball.
"I'm so glad to be free because now I can hug you and prank others with you and share in your joy," replies Discord hugging her. Screwball just laughs. The two then pop off to do their trademark chaos somewhere.
Fluttershy heads off to Sugar Cube Corner with her friends since she knows that Discord has got things handled with Screwball, albeit chaotically. Everything is back to normal. It may not be perfect, but her family is the best thing that ever happened to her. For now, though, she's just glad to be enjoying some homemade sweet treats with her friends.