Taken place straight after Rainbow Factory; Scootaloo finds herself saved and escapes the horrid factory, but her adventure is not over yet. In fact, some would say it has only begun.

There is something not right. And Scootaloo, alongside her new friends, must stop it, before it takes more victims. But as lives are saved, revelations will be found and friendships will be forged, broken and gained.

Also, take note that I did not realize there was an official sequel.

Several days after having a terrible nightmare, Scootaloo takes her final exam at the Cloudsdale Flight Academy, and with the help of Rainbow Dash gains insight into the nature of her own character as well as knowledge of the deepest secrets of the Rainbow Factory.
Upd: YouTube reading by linksbro1: link

This is a fan-made, alternative ending to AuroraDawn's "Rainbow Factory". All credit for the original story, and the source of my inspiration, goes fully to her.